RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 ZNF716A6NP11 495 aa4.19□□□□□ -1.74
CCDC39-204ENST00000476379 CD5P06127 495 aa4.19□□□□□ -1.74
CCDC39-204ENST00000476379 CRISP2P16562 243 aa4.19□□□□□ -1.74
CCDC39-204ENST00000476379 IQCJQ1A5X6 159 aa4.19□□□□□ -1.74
CCDC39-204ENST00000476379 ACOT6Q3I5F7 207 aaPredicted RBP4.19□□□□□ -1.74
CCDC39-204ENST00000476379 ZNF718Q3SXZ3 478 aa4.19□□□□□ -1.74
CCDC39-204ENST00000476379 TGIF2LYQ8IUE0 185 aa4.19□□□□□ -1.74
CCDC39-204ENST00000476379 STPG3Q8N7X2 389 aa4.19□□□□□ -1.74
CCDC39-204ENST00000476379 CLDND2Q8NHS1 167 aa4.19□□□□□ -1.74
CCDC39-204ENST00000476379 CMTM2Q8TAZ6 248 aa4.19□□□□□ -1.74
CCDC39-204ENST00000476379 IMMP1LQ96LU5 166 aa4.19□□□□□ -1.74
CCDC39-204ENST00000476379 NEU1Q99519 415 aa4.19□□□□□ -1.74
CCDC39-204ENST00000476379 OR51M1Q9H341 326 aa4.19□□□□□ -1.74
CCDC39-204ENST00000476379 DECR2Q9NUI1 292 aa4.19□□□□□ -1.74
CCDC39-204ENST00000476379 PRRC2AP48634 2157 aaKnown RBP4.18□□□□□ -1.74
CCDC39-204ENST00000476379 NIPBLQ6KC79 2804 aaeCLIP4.18□□□□□ -1.74
CCDC39-204ENST00000476379 LOC389332A0A1B0GUA5 103 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 FAM90A27PA6NNH2 459 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 K7N7A8 449 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 HSBP1O75506 76 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 FOXH1O75593 365 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 IGKV1-5P01602 117 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 CTXN2P0C2S0 81 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 CD1BP29016 333 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 CDX1P47902 265 aaPredicted RBP4.18□□□□□ -1.74
CCDC39-204ENST00000476379 UCP2P55851 309 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 UBE2L3P68036 154 aaKnown RBP4.18□□□□□ -1.74
CCDC39-204ENST00000476379 PAX5Q02548 391 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 TNFRSF9Q07011 255 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 SSPNQ14714 243 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 FBXW9Q5XUX1 488 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 MRPL14Q6P1L8 145 aaKnown RBP4.18□□□□□ -1.74
CCDC39-204ENST00000476379 GGNQ86UU5 652 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 LINC00469Q8N7U9 141 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 TMEM178AQ8NBL3 297 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 SLC24A4Q8NFF2 622 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 OR10W1Q8NGF6 305 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 OR1L6Q8NGR2 347 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 BORCS7Q96B45 105 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 PXMP4Q9Y6I8 212 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 IGKV1D-33P01593 117 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 IGKV1-33P01594 117 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 GAPDHP04406 335 aaKnown RBP4.18□□□□□ -1.74
CCDC39-204ENST00000476379 FRMD6-AS1P0C7T7 363 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 CCL3L1P16619 93 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 RPL11P62913 178 aaKnown RBP4.18□□□□□ -1.74
CCDC39-204ENST00000476379 TIGITQ495A1 244 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 TM4SF20Q53R12 229 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 FER1L6-AS2Q96M78 137 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 VAMP8Q9BV40 100 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 GNB4Q9HAV0 340 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 IL36GQ9NZH8 169 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 NAT8Q9UHE5 227 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 TUBD1Q9UJT1 453 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 PROCRQ9UNN8 238 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 TRAV5A0A0B4J249 113 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 LOC102723971A0A1B0GUV8 181 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 RNF212BA8MTL3 300 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 J3QT63 122 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 SP1P08047 785 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 IGFBP2P18065 325 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 FCER1GP30273 86 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 OR10J1P30954 320 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 UQCRFS1P47985 274 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 GNG4P50150 75 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 UBE2G1P62253 170 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 MRPS11P82912 194 aaKnown RBP4.18□□□□□ -1.74
CCDC39-204ENST00000476379 VAMP3Q15836 100 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 SMIM21Q3B7S5 101 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 LCN12Q6JVE5 192 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 Q6ZN92 141 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 PIP4P1Q86T03 277 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 OR1L4Q8NGR5 311 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 DAZAP1Q96EP5 407 aaKnown RBP4.18□□□□□ -1.74
CCDC39-204ENST00000476379 RNF2Q99496 336 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 VPS25Q9BRG1 176 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 ZNF331Q9NQX6 463 aaPredicted RBP4.18□□□□□ -1.74
CCDC39-204ENST00000476379 HIF1ANQ9NWT6 349 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 COL4A2P08572 1712 aa4.18□□□□□ -1.74
CCDC39-204ENST00000476379 TRGV8A0A0C4DH27 118 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 LINC00473A8K010 186 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 BMPR1BO00238 502 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 RRP8O43159 456 aaKnown RBP4.17□□□□□ -1.74
CCDC39-204ENST00000476379 IGHMP01871 453 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 PRDX2P32119 198 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 MFAP2P55001 183 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 LYZP61626 148 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 RPL31P62899 125 aaKnown RBP4.17□□□□□ -1.74
CCDC39-204ENST00000476379 GNG5P63218 68 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 RPP30P78346 268 aaKnown RBP4.17□□□□□ -1.74
CCDC39-204ENST00000476379 OR10G8Q8NGN5 311 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 TMEM54Q969K7 222 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 LOXL4Q96JB6 756 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 HIST1H2BLQ99880 126 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 GINS3Q9BRX5 216 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 PROK2Q9HC23 129 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 RAB9BQ9NP90 201 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 MANBALQ9NQG1 85 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 HILPDAQ9Y5L2 63 aa4.17□□□□□ -1.74
CCDC39-204ENST00000476379 IGHV3-66A0A0C4DH42 116 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms