RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 STAB2Q8WWQ8 2551 aa12.59□□□□□ -0.39
USP40-212ENST00000473191 IGLV11-55A0A075B6I3 123 aa12.58□□□□□ -0.4
USP40-212ENST00000473191 IGLC7A0M8Q6 106 aa12.58□□□□□ -0.4
USP40-212ENST00000473191 C2orf70A6NJV1 201 aa12.58□□□□□ -0.4
USP40-212ENST00000473191 UPK2O00526 184 aa12.58□□□□□ -0.4
USP40-212ENST00000473191 FOLR2P14207 255 aa12.58□□□□□ -0.4
USP40-212ENST00000473191 KIR2DS2P43631 304 aa12.58□□□□□ -0.4
USP40-212ENST00000473191 NCS1P62166 190 aa12.58□□□□□ -0.4
USP40-212ENST00000473191 DEFB114Q30KQ6 69 aa12.58□□□□□ -0.4
USP40-212ENST00000473191 SLC25A42Q86VD7 318 aa12.58□□□□□ -0.4
USP40-212ENST00000473191 ZBTB34Q8NCN2 500 aa12.58□□□□□ -0.4
USP40-212ENST00000473191 S100A16Q96FQ6 103 aaKnown RBP12.58□□□□□ -0.4
USP40-212ENST00000473191 ZNF2Q9BSG1 426 aaPredicted RBP12.58□□□□□ -0.4
USP40-212ENST00000473191 FXYD6Q9H0Q3 95 aa12.58□□□□□ -0.4
USP40-212ENST00000473191 EDA2RQ9HAV5 297 aa12.58□□□□□ -0.4
USP40-212ENST00000473191 IFT46Q9NQC8 304 aa12.58□□□□□ -0.4
USP40-212ENST00000473191 TMEM140Q9NV12 185 aa12.58□□□□□ -0.4
USP40-212ENST00000473191 RBFOX2O43251 390 aaKnown RBP eCLIP12.57□□□□□ -0.4
USP40-212ENST00000473191 GGCTO75223 188 aaKnown RBP12.57□□□□□ -0.4
USP40-212ENST00000473191 HPRT1P00492 218 aa12.57□□□□□ -0.4
USP40-212ENST00000473191 RLN1P04808 185 aa12.57□□□□□ -0.4
USP40-212ENST00000473191 CBX5P45973 191 aa12.57□□□□□ -0.4
USP40-212ENST00000473191 TAS2R31P59538 309 aa12.57□□□□□ -0.4
USP40-212ENST00000473191 CD81P60033 236 aa12.57□□□□□ -0.4
USP40-212ENST00000473191 POU2AF1Q16633 256 aa12.57□□□□□ -0.4
USP40-212ENST00000473191 KLK9Q2XQG4 91 aa12.57□□□□□ -0.4
USP40-212ENST00000473191 TMEM69Q5SWH9 247 aa12.57□□□□□ -0.4
USP40-212ENST00000473191 AADACL3Q5VUY0 350 aa12.57□□□□□ -0.4
USP40-212ENST00000473191 ZFAND6Q6FIF0 208 aa12.57□□□□□ -0.4
USP40-212ENST00000473191 DHRS11Q6UWP2 260 aa12.57□□□□□ -0.4
USP40-212ENST00000473191 LYSMD2Q8IV50 215 aa12.57□□□□□ -0.4
USP40-212ENST00000473191 KCTD12Q96CX2 325 aaKnown RBP12.57□□□□□ -0.4
USP40-212ENST00000473191 WDR89Q96FK6 387 aaPredicted RBP12.57□□□□□ -0.4
USP40-212ENST00000473191 CITED4Q96RK1 184 aa12.57□□□□□ -0.4
USP40-212ENST00000473191 KLK9Q9UKQ9 250 aa12.57□□□□□ -0.4
USP40-212ENST00000473191 CSMD3Q7Z407 3707 aa12.57□□□□□ -0.4
USP40-212ENST00000473191 TMEM213A2RRL7 107 aa12.56□□□□□ -0.4
USP40-212ENST00000473191 PGLYRP1O75594 196 aaPredicted RBP12.56□□□□□ -0.4
USP40-212ENST00000473191 NAT1P18440 290 aa12.56□□□□□ -0.4
USP40-212ENST00000473191 ARL3P36405 182 aa12.56□□□□□ -0.4
USP40-212ENST00000473191 CATR1Q13166 79 aa12.56□□□□□ -0.4
USP40-212ENST00000473191 UNQ9165/PRO28630Q6UXU0 137 aa12.56□□□□□ -0.4
USP40-212ENST00000473191 LINC00322Q6ZN03 302 aaPredicted RBP12.56□□□□□ -0.4
USP40-212ENST00000473191 GTSCR1Q86UQ5 136 aa12.56□□□□□ -0.4
USP40-212ENST00000473191 DEFB125Q8N687 156 aa12.56□□□□□ -0.4
USP40-212ENST00000473191 OR4A5Q8NH83 315 aa12.56□□□□□ -0.4
USP40-212ENST00000473191 FCAMRQ8WWV6 532 aa12.56□□□□□ -0.4
USP40-212ENST00000473191 MOB3AQ96BX8 217 aa12.56□□□□□ -0.4
USP40-212ENST00000473191 NSG2Q9Y328 171 aa12.56□□□□□ -0.4
USP40-212ENST00000473191 A0A087WXM4 84 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 IGHV3-35A0A0C4DH35 117 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 RBMY1BA6NDE4 496 aaKnown RBP12.55□□□□□ -0.4
USP40-212ENST00000473191 RBMY1EA6NEQ0 496 aaKnown RBP12.55□□□□□ -0.4
USP40-212ENST00000473191 LGALS9O00182 355 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 RBMY1DP0C7P1 496 aaKnown RBP12.55□□□□□ -0.4
USP40-212ENST00000473191 DEFA4P12838 97 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 NQO2P16083 231 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 CBLN1P23435 193 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 HLA-DMAP28067 261 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 HERV-K104P61576 105 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 VBP1P61758 197 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 ZNF585BQ52M93 769 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 DMBX1Q8NFW5 382 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 DYNLRB2Q8TF09 96 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 SLC25A46Q96AG3 418 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 FAM110AQ9BQ89 295 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 NEURL2Q9BR09 285 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 FUNDC2Q9BWH2 189 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 TUBA4BQ9H853 241 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 PLEKHA2Q9HB19 425 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 COMMD3Q9UBI1 195 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 MLXQ9UH92 298 aa12.55□□□□□ -0.4
USP40-212ENST00000473191 TEX50A0A1B0GTY4 177 aa12.54□□□□□ -0.4
USP40-212ENST00000473191 ZNF320A2RRD8 509 aa12.54□□□□□ -0.4
USP40-212ENST00000473191 DBX1A6NMT0 343 aa12.54□□□□□ -0.4
USP40-212ENST00000473191 TMEM127O75204 238 aa12.54□□□□□ -0.4
USP40-212ENST00000473191 CLEC3BP05452 202 aa12.54□□□□□ -0.4
USP40-212ENST00000473191 HRH1P35367 487 aa12.54□□□□□ -0.4
USP40-212ENST00000473191 MFAP2P55001 183 aa12.54□□□□□ -0.4
USP40-212ENST00000473191 WT1-ASQ06250 92 aa12.54□□□□□ -0.4
USP40-212ENST00000473191 TM4SF20Q53R12 229 aa12.54□□□□□ -0.4
USP40-212ENST00000473191 GPHB5Q86YW7 130 aa12.54□□□□□ -0.4
USP40-212ENST00000473191 CROCCP3Q8IVE0 287 aa12.54□□□□□ -0.4
USP40-212ENST00000473191 OR2K2Q8NGT1 345 aa12.54□□□□□ -0.4
USP40-212ENST00000473191 EEF1AKMT3Q96AZ1 226 aa12.54□□□□□ -0.4
USP40-212ENST00000473191 NAA50Q9GZZ1 169 aaKnown RBP12.54□□□□□ -0.4
USP40-212ENST00000473191 IGHV3-21A0A0B4J1V1 117 aa12.53□□□□□ -0.4
USP40-212ENST00000473191 TNFAIP8O95379 198 aa12.53□□□□□ -0.4
USP40-212ENST00000473191 LYL1P12980 280 aa12.53□□□□□ -0.4
USP40-212ENST00000473191 GPR183P32249 361 aa12.53□□□□□ -0.4
USP40-212ENST00000473191 G6PCP35575 357 aa12.53□□□□□ -0.4
USP40-212ENST00000473191 LPAR6P43657 344 aa12.53□□□□□ -0.4
USP40-212ENST00000473191 GUCA2BQ16661 112 aa12.53□□□□□ -0.4
USP40-212ENST00000473191 PHLDA2Q53GA4 152 aa12.53□□□□□ -0.4
USP40-212ENST00000473191 TMEM61Q8N0U2 210 aa12.53□□□□□ -0.4
USP40-212ENST00000473191 OR5H2Q8NGV7 314 aa12.53□□□□□ -0.4
USP40-212ENST00000473191 ZNF502Q8TBZ5 544 aa12.53□□□□□ -0.4
USP40-212ENST00000473191 GPX8Q8TED1 209 aa12.53□□□□□ -0.4
USP40-212ENST00000473191 LYSTQ99698 3801 aa12.53□□□□□ -0.4
USP40-212ENST00000473191 SPATA25Q9BR10 227 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms