RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 NAT1P18440 290 aa12.32□□□□□ -0.44
COL9A3-208ENST00000469802 EDN2P20800 178 aa12.32□□□□□ -0.44
COL9A3-208ENST00000469802 GNRHRP30968 328 aa12.32□□□□□ -0.44
COL9A3-208ENST00000469802 HAGHQ16775 308 aa12.32□□□□□ -0.44
COL9A3-208ENST00000469802 S100A16Q96FQ6 103 aaKnown RBP12.32□□□□□ -0.44
COL9A3-208ENST00000469802 LYSTQ99698 3801 aa12.32□□□□□ -0.44
COL9A3-208ENST00000469802 PLEKHA2Q9HB19 425 aa12.32□□□□□ -0.44
COL9A3-208ENST00000469802 TRAV3A0A0B4J244 114 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 ZNF785A8K8V0 405 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 A8MWP6 167 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 UPK2O00526 184 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 S1PR2O95136 353 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 REG1AP05451 166 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 TAS2R20P59543 309 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 DEFB114Q30KQ6 69 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 TMEM69Q5SWH9 247 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 DHRS11Q6UWP2 260 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 LINC00322Q6ZN03 302 aaPredicted RBP12.31□□□□□ -0.44
COL9A3-208ENST00000469802 GPHB5Q86YW7 130 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 SAMD12Q8N8I0 201 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 TSPAN14Q8NG11 270 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 OR51H1Q8NH63 302 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 CD300LFQ8TDQ1 290 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 BORCS5Q969J3 196 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 MOB3AQ96BX8 217 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 SPATA25Q9BR10 227 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 SRSF8Q9BRL6 282 aaKnown RBP12.31□□□□□ -0.44
COL9A3-208ENST00000469802 HRASLSQ9HDD0 168 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 IFT46Q9NQC8 304 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 TMEM140Q9NV12 185 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 EHFQ9NZC4 300 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 COMMD9Q9P000 198 aa12.31□□□□□ -0.44
COL9A3-208ENST00000469802 RYR2Q92736 4967 aa12.3□□□□□ -0.44
COL9A3-208ENST00000469802 A0A087WXM4 84 aa12.3□□□□□ -0.44
COL9A3-208ENST00000469802 OR2C1O95371 312 aa12.3□□□□□ -0.44
COL9A3-208ENST00000469802 IGHV3-23P01764 117 aa12.3□□□□□ -0.44
COL9A3-208ENST00000469802 FOLR2P14207 255 aa12.3□□□□□ -0.44
COL9A3-208ENST00000469802 ARL3P36405 182 aa12.3□□□□□ -0.44
COL9A3-208ENST00000469802 HERV-K104P61576 105 aa12.3□□□□□ -0.44
COL9A3-208ENST00000469802 AADACL3Q5VUY0 350 aa12.3□□□□□ -0.44
COL9A3-208ENST00000469802 CLEC19AQ6UXS0 136 aa12.3□□□□□ -0.44
COL9A3-208ENST00000469802 SLC25A46Q96AG3 418 aa12.3□□□□□ -0.44
COL9A3-208ENST00000469802 EEF1AKMT3Q96AZ1 226 aa12.3□□□□□ -0.44
COL9A3-208ENST00000469802 FXYD6Q9H0Q3 95 aa12.3□□□□□ -0.44
COL9A3-208ENST00000469802 S4R3C0 116 aa12.3□□□□□ -0.44
COL9A3-208ENST00000469802 TMEM213A2RRL7 107 aa12.29□□□□□ -0.44
COL9A3-208ENST00000469802 MFSD2BA6NFX1 497 aa12.29□□□□□ -0.44
COL9A3-208ENST00000469802 TNFAIP8O95379 198 aa12.29□□□□□ -0.44
COL9A3-208ENST00000469802 RFX2P48378 723 aa12.29□□□□□ -0.44
COL9A3-208ENST00000469802 TAS2R46P59540 309 aa12.29□□□□□ -0.44
COL9A3-208ENST00000469802 CD81P60033 236 aa12.29□□□□□ -0.44
COL9A3-208ENST00000469802 LSM3P62310 102 aaKnown RBP12.29□□□□□ -0.44
COL9A3-208ENST00000469802 DYNLRB2Q8TF09 96 aa12.29□□□□□ -0.44
COL9A3-208ENST00000469802 COMMD5Q9GZQ3 224 aa12.29□□□□□ -0.44
COL9A3-208ENST00000469802 PLEKHA3Q9HB20 300 aa12.29□□□□□ -0.44
COL9A3-208ENST00000469802 VCX3AQ9NNX9 186 aa12.29□□□□□ -0.44
COL9A3-208ENST00000469802 TECRQ9NZ01 308 aaKnown RBP12.29□□□□□ -0.44
COL9A3-208ENST00000469802 TENM2Q9NT68 2774 aa12.28□□□□□ -0.44
COL9A3-208ENST00000469802 TRBV7-1A0A0A6YYK4 115 aa12.28□□□□□ -0.44
COL9A3-208ENST00000469802 RLN1P04808 185 aa12.28□□□□□ -0.44
COL9A3-208ENST00000469802 LYL1P12980 280 aa12.28□□□□□ -0.44
COL9A3-208ENST00000469802 F2RP25116 425 aa12.28□□□□□ -0.44
COL9A3-208ENST00000469802 THOC7Q6I9Y2 204 aaKnown RBP12.28□□□□□ -0.44
COL9A3-208ENST00000469802 CADM3Q8N126 398 aa12.28□□□□□ -0.44
COL9A3-208ENST00000469802 ZNF502Q8TBZ5 544 aa12.28□□□□□ -0.44
COL9A3-208ENST00000469802 CACNG8Q8WXS5 425 aa12.28□□□□□ -0.44
COL9A3-208ENST00000469802 ISOC1Q96CN7 298 aa12.28□□□□□ -0.44
COL9A3-208ENST00000469802 CXorf58Q96LI9 332 aa12.28□□□□□ -0.44
COL9A3-208ENST00000469802 NEURL2Q9BR09 285 aa12.28□□□□□ -0.44
COL9A3-208ENST00000469802 ZNF2Q9BSG1 426 aaPredicted RBP12.28□□□□□ -0.44
COL9A3-208ENST00000469802 QTRT1Q9BXR0 403 aaKnown RBP12.28□□□□□ -0.44
COL9A3-208ENST00000469802 TUBA4BQ9H853 241 aa12.28□□□□□ -0.44
COL9A3-208ENST00000469802 SACSQ9NZJ4 4579 aa12.27□□□□□ -0.45
COL9A3-208ENST00000469802 MARCH11A6NNE9 402 aa12.27□□□□□ -0.45
COL9A3-208ENST00000469802 PGLYRP1O75594 196 aaPredicted RBP12.27□□□□□ -0.45
COL9A3-208ENST00000469802 PMP2P02689 132 aa12.27□□□□□ -0.45
COL9A3-208ENST00000469802 EIF4EP06730 217 aaKnown RBP12.27□□□□□ -0.45
COL9A3-208ENST00000469802 CD7P09564 240 aa12.27□□□□□ -0.45
COL9A3-208ENST00000469802 DEFA4P12838 97 aa12.27□□□□□ -0.45
COL9A3-208ENST00000469802 CBLN1P23435 193 aa12.27□□□□□ -0.45
COL9A3-208ENST00000469802 GDPD1Q8N9F7 314 aa12.27□□□□□ -0.45
COL9A3-208ENST00000469802 DMBX1Q8NFW5 382 aa12.27□□□□□ -0.45
COL9A3-208ENST00000469802 OR5H2Q8NGV7 314 aa12.27□□□□□ -0.45
COL9A3-208ENST00000469802 GPX8Q8TED1 209 aa12.27□□□□□ -0.45
COL9A3-208ENST00000469802 WDR89Q96FK6 387 aaPredicted RBP12.27□□□□□ -0.45
COL9A3-208ENST00000469802 SLC2A8Q9NY64 477 aa12.27□□□□□ -0.45
COL9A3-208ENST00000469802 CEPT1Q9Y6K0 416 aa12.27□□□□□ -0.45
COL9A3-208ENST00000469802 TPPPO94811 219 aa12.26□□□□□ -0.45
COL9A3-208ENST00000469802 PRSS3P35030 304 aa12.26□□□□□ -0.45
COL9A3-208ENST00000469802 HRH1P35367 487 aa12.26□□□□□ -0.45
COL9A3-208ENST00000469802 NCS1P62166 190 aa12.26□□□□□ -0.45
COL9A3-208ENST00000469802 WT1-ASQ06250 92 aa12.26□□□□□ -0.45
COL9A3-208ENST00000469802 ZNF585BQ52M93 769 aa12.26□□□□□ -0.45
COL9A3-208ENST00000469802 LYSMD2Q8IV50 215 aa12.26□□□□□ -0.45
COL9A3-208ENST00000469802 TMEM61Q8N0U2 210 aa12.26□□□□□ -0.45
COL9A3-208ENST00000469802 OR10W1Q8NGF6 305 aa12.26□□□□□ -0.45
COL9A3-208ENST00000469802 FCAMRQ8WWV6 532 aa12.26□□□□□ -0.45
COL9A3-208ENST00000469802 DGCR14Q96DF8 476 aaKnown RBP12.26□□□□□ -0.45
COL9A3-208ENST00000469802 CMTM3Q96MX0 182 aa12.26□□□□□ -0.45
COL9A3-208ENST00000469802 WFDC10AQ9H1F0 79 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms