RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 SRRM4A7MD48 611 aaKnown RBP6.94□□□□□ -1.3
SYNE1-214ENST00000454018 HLA-AP01891 365 aaKnown RBP6.94□□□□□ -1.3
SYNE1-214ENST00000454018 FGF2P09038 288 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 HKR1P10072 659 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 AKR1C2P52895 323 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 SUPT4H1P63272 117 aaKnown RBP6.94□□□□□ -1.3
SYNE1-214ENST00000454018 PPP1R1AQ13522 171 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 PLET1Q6UQ28 207 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 Q6ZSV7 163 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 PPP1R27Q86WC6 154 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 PUSL1Q8N0Z8 303 aaKnown RBP6.94□□□□□ -1.3
SYNE1-214ENST00000454018 CADM3Q8N126 398 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.94□□□□□ -1.3
SYNE1-214ENST00000454018 LINC00482Q8N8I6 264 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 DUSP18Q8NEJ0 188 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 DMBX1Q8NFW5 382 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 OR4A5Q8NH83 315 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 GLYATL2Q8WU03 294 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 RBPMSQ93062 196 aaKnown RBP6.94□□□□□ -1.3
SYNE1-214ENST00000454018 IL22RA2Q969J5 263 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 SLC25A32Q9H2D1 315 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 FBXL15Q9H469 300 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 ZNF702PQ9H963 129 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 BET1LQ9NYM9 111 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 FLVCR2Q9UPI3 526 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 COL6A5A8TX70 2615 aa6.94□□□□□ -1.3
SYNE1-214ENST00000454018 TRAV6A0A075B6T7 132 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 A0A1B0GUS0 222 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 OR2A4O95047 310 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 CDS2O95674 445 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 KRASP01116 189 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 IGHG2P01859 326 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 CRYGBP07316 175 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 OR4E1P0C645 316 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 BLCAPP62952 87 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 TMEM187Q14656 261 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 KRTAP24-1Q3LI83 254 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 SP6Q3SY56 376 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 C9orf152Q5JTZ5 239 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 OR4A47Q6IF82 309 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 SSX9Q7RTT3 188 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 SLC35E3Q7Z769 313 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 MMD2Q8IY49 270 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 VKORC1L1Q8N0U8 176 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 TMEM167AQ8TBQ9 72 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 TMEM158Q8WZ71 300 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 SEC22AQ96IW7 307 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 TMEM56Q96MV1 263 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 OR2A7Q96R45 310 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 ALX4Q9H161 411 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-214ENST00000454018 C16orf95Q9H693 158 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 ZNF580Q9UK33 172 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 TMEM56-RWDD3S4R434 201 aa6.93□□□□□ -1.3
SYNE1-214ENST00000454018 DUXBA0A1W2PPF3 345 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 AP4M1O00189 453 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 SFT2D2O95562 160 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 CA2P00918 260 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 IGKV1-39P01597 117 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 IGKV1D-39P04432 117 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 ANXA7P20073 488 aaKnown RBP6.92□□□□□ -1.3
SYNE1-214ENST00000454018 MAS1LP35410 378 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 G6PCP35575 357 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 VDAC2P45880 294 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-214ENST00000454018 RPL8P62917 257 aaKnown RBP6.92□□□□□ -1.3
SYNE1-214ENST00000454018 FOXL1Q12952 345 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 DHRS2Q13268 280 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 PRSS8Q16651 343 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 H2BFWTQ7Z2G1 175 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 LYG2Q86SG7 212 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 ZNF695Q8IW36 515 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 FAM219AQ8IW50 185 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 FOXRED2Q8IWF2 684 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 LGI3Q8N145 548 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 LRTM2Q8N967 370 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 RNASE11Q8TAA1 199 aaKnown RBP6.92□□□□□ -1.3
SYNE1-214ENST00000454018 HSPB9Q9BQS6 159 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 ZNF430Q9H8G1 570 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-214ENST00000454018 BEX1Q9HBH7 125 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 MMP24Q9Y5R2 645 aa6.92□□□□□ -1.3
SYNE1-214ENST00000454018 IGHV7-81A0A0B4J1V7 117 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 A0A0B4J2A0 478 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 C9orf170A2RU37 121 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 SH2D7A6NKC9 451 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-214ENST00000454018 PRAF2O60831 178 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 DUS4LO95620 317 aaKnown RBP6.91□□□□□ -1.3
SYNE1-214ENST00000454018 RAB25P57735 213 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 CX3CL1P78423 397 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 SRSF3P84103 164 aaKnown RBP6.91□□□□□ -1.3
SYNE1-214ENST00000454018 RGS21Q2M5E4 152 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 PRR31Q5SQ13 230 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 TMEM268Q5VZI3 342 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 ZNF562Q6V9R5 426 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 SLC35G3Q8N808 338 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 LINC01006Q8NI28 216 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 COQ8AQ8NI60 647 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 LHFPL5Q8TAF8 219 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 CASTOR1Q8WTX7 329 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 ARPC1AQ92747 370 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 LSM10Q969L4 123 aaKnown RBP6.91□□□□□ -1.3
SYNE1-214ENST00000454018 RRNAD1Q96FB5 475 aaKnown RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms