RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 BET1LQ9NYM9 111 aa13.61□□□□□ -0.23
LIME1-202ENST00000444951 MMP24Q9Y5R2 645 aa13.61□□□□□ -0.23
LIME1-202ENST00000444951 A0A0B4J293 547 aa13.6□□□□□ -0.23
LIME1-202ENST00000444951 A0A0B4J2A0 478 aa13.6□□□□□ -0.23
LIME1-202ENST00000444951 HLA-DRB1P01911 266 aa13.6□□□□□ -0.23
LIME1-202ENST00000444951 RPL8P62917 257 aaKnown RBP13.6□□□□□ -0.23
LIME1-202ENST00000444951 CX3CL1P78423 397 aa13.6□□□□□ -0.23
LIME1-202ENST00000444951 MRGPRG-AS1Q2M3A8 158 aa13.6□□□□□ -0.23
LIME1-202ENST00000444951 C10orf55Q5SWW7 151 aa13.6□□□□□ -0.23
LIME1-202ENST00000444951 SLC35E3Q7Z769 313 aa13.6□□□□□ -0.23
LIME1-202ENST00000444951 MMD2Q8IY49 270 aa13.6□□□□□ -0.23
LIME1-202ENST00000444951 OR4A16Q8NH70 328 aa13.6□□□□□ -0.23
LIME1-202ENST00000444951 OR4A5Q8NH83 315 aa13.6□□□□□ -0.23
LIME1-202ENST00000444951 SHPKQ9UHJ6 478 aa13.6□□□□□ -0.23
LIME1-202ENST00000444951 LINC00527Q9UJ94 153 aa13.6□□□□□ -0.23
LIME1-202ENST00000444951 ALG5Q9Y673 324 aa13.6□□□□□ -0.23
LIME1-202ENST00000444951 IGHV7-81A0A0B4J1V7 117 aa13.59□□□□□ -0.23
LIME1-202ENST00000444951 CCSO14618 274 aa13.59□□□□□ -0.23
LIME1-202ENST00000444951 SSNA1O43805 119 aa13.59□□□□□ -0.23
LIME1-202ENST00000444951 NXPH3O95157 252 aa13.59□□□□□ -0.23
LIME1-202ENST00000444951 HLA-GP17693 338 aa13.59□□□□□ -0.23
LIME1-202ENST00000444951 KRTAP10-3P60369 221 aa13.59□□□□□ -0.23
LIME1-202ENST00000444951 FXYD3Q14802 87 aa13.59□□□□□ -0.23
LIME1-202ENST00000444951 GGNBP1Q5YKI7 109 aa13.59□□□□□ -0.23
LIME1-202ENST00000444951 LRTM2Q8N967 370 aa13.59□□□□□ -0.23
LIME1-202ENST00000444951 MINDY2Q8NBR6 621 aa13.59□□□□□ -0.23
LIME1-202ENST00000444951 WFDC12Q8WWY7 111 aa13.59□□□□□ -0.23
LIME1-202ENST00000444951 FAM103A1Q9BTL3 118 aaKnown RBP13.59□□□□□ -0.23
LIME1-202ENST00000444951 HINT2Q9BX68 163 aa13.59□□□□□ -0.23
LIME1-202ENST00000444951 CACNG5Q9UF02 275 aa13.59□□□□□ -0.23
LIME1-202ENST00000444951 NOTCH1P46531 2555 aa13.59□□□□□ -0.23
LIME1-202ENST00000444951 FAM25EA8MYX2 175 aa13.58□□□□□ -0.24
LIME1-202ENST00000444951 IFNA21P01568 189 aa13.58□□□□□ -0.24
LIME1-202ENST00000444951 APELAP0DMC3 54 aa13.58□□□□□ -0.24
LIME1-202ENST00000444951 VDAC1P21796 283 aa13.58□□□□□ -0.24
LIME1-202ENST00000444951 VDAC2P45880 294 aaPredicted RBP13.58□□□□□ -0.24
LIME1-202ENST00000444951 RPL15P61313 204 aaKnown RBP13.58□□□□□ -0.24
LIME1-202ENST00000444951 NDPQ00604 133 aa13.58□□□□□ -0.24
LIME1-202ENST00000444951 DEFA6Q01524 100 aa13.58□□□□□ -0.24
LIME1-202ENST00000444951 ZNF562Q6V9R5 426 aa13.58□□□□□ -0.24
LIME1-202ENST00000444951 Q6ZRM9 215 aa13.58□□□□□ -0.24
LIME1-202ENST00000444951 OR2T6Q8NHC8 308 aa13.58□□□□□ -0.24
LIME1-202ENST00000444951 ARPC1AQ92747 370 aa13.58□□□□□ -0.24
LIME1-202ENST00000444951 LSM10Q969L4 123 aaKnown RBP13.58□□□□□ -0.24
LIME1-202ENST00000444951 FYTTD1Q96QD9 318 aaKnown RBP13.58□□□□□ -0.24
LIME1-202ENST00000444951 QTRT1Q9BXR0 403 aaKnown RBP13.58□□□□□ -0.24
LIME1-202ENST00000444951 COMMD5Q9GZQ3 224 aa13.58□□□□□ -0.24
LIME1-202ENST00000444951 OR51J1Q9H342 316 aa13.58□□□□□ -0.24
LIME1-202ENST00000444951 OR51B2Q9Y5P1 312 aa13.58□□□□□ -0.24
LIME1-202ENST00000444951 PIGBOS1A0A0B4J2F0 54 aa13.57□□□□□ -0.24
LIME1-202ENST00000444951 C13orf42A0A1B0GVH6 325 aa13.57□□□□□ -0.24
LIME1-202ENST00000444951 DUXBA0A1W2PPF3 345 aa13.57□□□□□ -0.24
LIME1-202ENST00000444951 DBX1A6NMT0 343 aa13.57□□□□□ -0.24
LIME1-202ENST00000444951 SNRPGP15A8MWD9 76 aa13.57□□□□□ -0.24
LIME1-202ENST00000444951 ATP6V0E1O15342 81 aa13.57□□□□□ -0.24
LIME1-202ENST00000444951 IL6RP08887 468 aaPredicted RBP13.57□□□□□ -0.24
LIME1-202ENST00000444951 P0C879 139 aa13.57□□□□□ -0.24
LIME1-202ENST00000444951 SSBP2P81877 361 aaPredicted RBP13.57□□□□□ -0.24
LIME1-202ENST00000444951 NMSQ5H8A3 153 aa13.57□□□□□ -0.24
LIME1-202ENST00000444951 FAM219AQ8IW50 185 aa13.57□□□□□ -0.24
LIME1-202ENST00000444951 NOL4LQ96MY1 436 aaPredicted RBP13.57□□□□□ -0.24
LIME1-202ENST00000444951 PRNDQ9UKY0 176 aa13.57□□□□□ -0.24
LIME1-202ENST00000444951 FBXO7Q9Y3I1 522 aa13.57□□□□□ -0.24
LIME1-202ENST00000444951 TMED3Q9Y3Q3 217 aa13.57□□□□□ -0.24
LIME1-202ENST00000444951 WSB1Q9Y6I7 421 aa13.57□□□□□ -0.24
LIME1-202ENST00000444951 TEX50A0A1B0GTY4 177 aa13.56□□□□□ -0.24
LIME1-202ENST00000444951 MSGN1A6NI15 193 aa13.56□□□□□ -0.24
LIME1-202ENST00000444951 C15orf61A6NNL5 157 aa13.56□□□□□ -0.24
LIME1-202ENST00000444951 MPTX1A8MV57 137 aa13.56□□□□□ -0.24
LIME1-202ENST00000444951 TSPAN9O75954 239 aa13.56□□□□□ -0.24
LIME1-202ENST00000444951 IGHG2P01859 326 aa13.56□□□□□ -0.24
LIME1-202ENST00000444951 SULT1A3P0DMM9 295 aa13.56□□□□□ -0.24
LIME1-202ENST00000444951 SULT1A4P0DMN0 295 aa13.56□□□□□ -0.24
LIME1-202ENST00000444951 RPL27AP46776 148 aaKnown RBP13.56□□□□□ -0.24
LIME1-202ENST00000444951 ECSCRQ19T08 205 aa13.56□□□□□ -0.24
LIME1-202ENST00000444951 PDLIM3Q53GG5 364 aaPredicted RBP13.56□□□□□ -0.24
LIME1-202ENST00000444951 SPINK9Q5DT21 86 aa13.56□□□□□ -0.24
LIME1-202ENST00000444951 THOC7Q6I9Y2 204 aaKnown RBP13.56□□□□□ -0.24
LIME1-202ENST00000444951 FOXRED2Q8IWF2 684 aa13.56□□□□□ -0.24
LIME1-202ENST00000444951 OR1S1Q8NH92 325 aa13.56□□□□□ -0.24
LIME1-202ENST00000444951 SRSF12Q8WXF0 261 aaKnown RBP13.56□□□□□ -0.24
LIME1-202ENST00000444951 C7orf66A4D0T2 115 aa13.55□□□□□ -0.24
LIME1-202ENST00000444951 C5orf51A6NDU8 294 aa13.55□□□□□ -0.24
LIME1-202ENST00000444951 HMX3A6NHT5 357 aa13.55□□□□□ -0.24
LIME1-202ENST00000444951 GOSR2O14653 212 aa13.55□□□□□ -0.24
LIME1-202ENST00000444951 NDUFA7O95182 113 aa13.55□□□□□ -0.24
LIME1-202ENST00000444951 IFNA17P01571 189 aa13.55□□□□□ -0.24
LIME1-202ENST00000444951 MAS1LP35410 378 aa13.55□□□□□ -0.24
LIME1-202ENST00000444951 SMCO1Q147U7 214 aa13.55□□□□□ -0.24
LIME1-202ENST00000444951 C2orf68Q2NKX9 166 aa13.55□□□□□ -0.24
LIME1-202ENST00000444951 OR4F5Q8NH21 305 aa13.55□□□□□ -0.24
LIME1-202ENST00000444951 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.55□□□□□ -0.24
LIME1-202ENST00000444951 FOXA2Q9Y261 457 aaPredicted RBP13.55□□□□□ -0.24
LIME1-202ENST00000444951 E7EUB6 86 aa13.54□□□□□ -0.24
LIME1-202ENST00000444951 G3V318 75 aa13.54□□□□□ -0.24
LIME1-202ENST00000444951 AP4M1O00189 453 aa13.54□□□□□ -0.24
LIME1-202ENST00000444951 ST8SIA3O43173 380 aa13.54□□□□□ -0.24
LIME1-202ENST00000444951 SIX6O95475 246 aa13.54□□□□□ -0.24
LIME1-202ENST00000444951 Q8N2B8 174 aa13.54□□□□□ -0.24
LIME1-202ENST00000444951 LFNGQ8NES3 379 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms