RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 SCO2A0A1W2PP80 73 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 SRRM5B3KS81 715 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 RRHO14718 337 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 HMGB3O15347 200 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 LINC00869P0C866 280 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 GPR12P47775 334 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 HSPE1P61604 102 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 ARG2P78540 354 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 ZNF90Q03938 601 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 SRYQ05066 204 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 AESQ08117 197 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 PRSS8Q16651 343 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 MMD2Q8IY49 270 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 PRR18Q8N4B5 295 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 Q8TCH9 128 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 FER1L6-AS2Q96M78 137 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 IFI27L2Q9H2X8 130 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 PRO3102Q9H379 93 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 MSL2Q9HCI7 577 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 CBLN4Q9NTU7 201 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 C1RLQ9NZP8 487 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 TCF19Q9Y242 345 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 DYSFO75923 2080 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 C9orf172C9J069 976 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 SERF1AO75920 110 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 KLF5Q13887 457 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 PRAMEF5Q5TYX0 476 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 PRAMEF6Q5VXH4 476 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 MYPOPQ86VE0 399 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 GCNT2Q8N0V5 402 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 SLC24A4Q8NFF2 622 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 OR1L6Q8NGR2 347 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 FAM222BQ8WU58 562 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 KCNS1Q96KK3 526 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 TMEM208Q9BTX3 173 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 VAMP8Q9BV40 100 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 PATZ1Q9HBE1 687 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 USF3Q68DE3 2245 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 TRGV5A0A0B4J1U4 118 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 CRYAAP02489 173 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 CFIP05156 583 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 GABRA2P47869 451 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 PPOXP50336 477 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 EDDM3BP56851 147 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 SRSF2Q01130 221 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 C2orf83Q53S99 150 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 COL5A1-AS1Q5SY13 56 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 TMEM136Q6ZRR5 245 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 ZNF808Q8N4W9 903 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 STPG3Q8N7X2 389 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 OR1L8Q8NGR8 309 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 OR5B3Q8NH48 314 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 MRGPRDQ8TDS7 321 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 CACNG8Q8WXS5 425 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 IGF2BP2-AS1Q96M15 143 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 S1PR3Q99500 378 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 CHRDL1Q9BU40 450 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 HEYLQ9NQ87 328 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 TMEM140Q9NV12 185 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 ZNF586Q9NXT0 402 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 TECRQ9NZ01 308 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 PRNDQ9UKY0 176 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 PSG11Q9UQ72 335 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 FAM166BA8MTA8 275 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 ZNF253O75346 499 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 OR2J3O76001 311 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 LHBP01229 141 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 AMY1AP04745 511 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 NPY1RP25929 384 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 GATA4P43694 442 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 PRRX1P54821 245 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 TAS2R45P59539 299 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 KRTCAP3Q53RY4 240 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 GCSAMLQ5JQS6 135 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 MIC13Q5XKP0 118 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 FAM214BQ7L5A3 538 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 CD177Q8N6Q3 437 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 ZNF439Q8NDP4 499 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 MBD6Q96DN6 1003 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 ZNF714Q96N38 554 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 RBM14Q96PK6 669 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 FAM234AQ9H0X4 552 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 PARD6AQ9NPB6 346 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 FSCN3Q9NQT6 498 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 SPRR3Q9UBC9 169 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 CDC42EP3Q9UKI2 254 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 ZFP30Q9Y2G7 519 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 MRPS16Q9Y3D3 137 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 GOLT1BQ9Y3E0 138 aa4.72□□□□□ -1.65
CCDC88A-203ENST00000412148 PSMB11A5LHX3 300 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 IZUMO1RA6ND01 250 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 HELTA6NFD8 242 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 FCGR3BO75015 233 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 IGLV2-8P01709 118 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 GRPP07492 148 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 CELA3BP08861 270 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 CBLN1P23435 193 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 PRDX2P32119 198 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 SSTR5P35346 364 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 MPV17P39210 176 aa4.71□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms