RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 IFNA4P05014 189 aa12.19□□□□□ -0.46
CBX3-202ENST00000396386 SNRNP70P08621 437 aaKnown RBP12.19□□□□□ -0.46
CBX3-202ENST00000396386 SAA1P0DJI8 122 aaPredicted RBP12.19□□□□□ -0.46
CBX3-202ENST00000396386 COL8A2P25067 703 aa12.19□□□□□ -0.46
CBX3-202ENST00000396386 ZNF137PP52743 207 aa12.19□□□□□ -0.46
CBX3-202ENST00000396386 ABHD12Q8N2K0 398 aa12.19□□□□□ -0.46
CBX3-202ENST00000396386 OR10G4Q8NGN3 311 aa12.19□□□□□ -0.46
CBX3-202ENST00000396386 OR10G9Q8NGN4 311 aa12.19□□□□□ -0.46
CBX3-202ENST00000396386 OR10G7Q8NGN6 311 aa12.19□□□□□ -0.46
CBX3-202ENST00000396386 LHX4Q969G2 390 aa12.19□□□□□ -0.46
CBX3-202ENST00000396386 SLC25A22Q9H936 323 aa12.19□□□□□ -0.46
CBX3-202ENST00000396386 PLEKHA3Q9HB20 300 aa12.19□□□□□ -0.46
CBX3-202ENST00000396386 PKDREJQ9NTG1 2253 aa12.18□□□□□ -0.46
CBX3-202ENST00000396386 KBTBD11O94819 623 aa12.18□□□□□ -0.46
CBX3-202ENST00000396386 IL3RAP26951 378 aa12.18□□□□□ -0.46
CBX3-202ENST00000396386 REG1BP48304 166 aa12.18□□□□□ -0.46
CBX3-202ENST00000396386 CEBPGP53567 150 aa12.18□□□□□ -0.46
CBX3-202ENST00000396386 PRCDQ00LT1 54 aa12.18□□□□□ -0.46
CBX3-202ENST00000396386 TMEM177Q53S58 311 aa12.18□□□□□ -0.46
CBX3-202ENST00000396386 PDPNQ86YL7 162 aa12.18□□□□□ -0.46
CBX3-202ENST00000396386 CYB561D1Q8N8Q1 229 aa12.18□□□□□ -0.46
CBX3-202ENST00000396386 TMEM170AQ8WVE7 144 aa12.18□□□□□ -0.46
CBX3-202ENST00000396386 NABP2Q9BQ15 211 aa12.18□□□□□ -0.46
CBX3-202ENST00000396386 HINT2Q9BX68 163 aa12.18□□□□□ -0.46
CBX3-202ENST00000396386 ACTR3CQ9C0K3 210 aaPredicted RBP12.18□□□□□ -0.46
CBX3-202ENST00000396386 RAB1BQ9H0U4 201 aa12.18□□□□□ -0.46
CBX3-202ENST00000396386 FKBP11Q9NYL4 201 aa12.18□□□□□ -0.46
CBX3-202ENST00000396386 C7orf77A4D0Y5 90 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 SRRM4A7MD48 611 aaKnown RBP12.17□□□□□ -0.46
CBX3-202ENST00000396386 ACOT6Q3I5F7 207 aaPredicted RBP12.17□□□□□ -0.46
CBX3-202ENST00000396386 FAM122CQ6P4D5 195 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 C20orf24Q9BUV8 137 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 TMEM133Q9H2Q1 129 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 CBLN4Q9NTU7 201 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 PUS1Q9Y606 427 aaKnown RBP eCLIP12.17□□□□□ -0.46
CBX3-202ENST00000396386 ROS1P08922 2347 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 A0A1W2PPH5 198 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 MYOD1P15172 320 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 AKR1C3P42330 323 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 RAB13P51153 203 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 PMS2P11Q13670 270 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 OR5B3Q8NH48 314 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 ST6GALNAC6Q969X2 333 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 FLYWCH2Q96CP2 140 aaKnown RBP12.17□□□□□ -0.46
CBX3-202ENST00000396386 PCGF1Q9BSM1 259 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 KCNIP2Q9NS61 270 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 VAX2Q9UIW0 290 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 WASHC3Q9Y3C0 194 aa12.17□□□□□ -0.46
CBX3-202ENST00000396386 CA2P00918 260 aa12.16□□□□□ -0.46
CBX3-202ENST00000396386 PAX6P26367 422 aa12.16□□□□□ -0.46
CBX3-202ENST00000396386 AVPI1Q5T686 147 aa12.16□□□□□ -0.46
CBX3-202ENST00000396386 TREML4Q6UXN2 200 aa12.16□□□□□ -0.46
CBX3-202ENST00000396386 ZNF841Q6ZN19 808 aa12.16□□□□□ -0.46
CBX3-202ENST00000396386 TGIF2LXQ8IUE1 241 aa12.16□□□□□ -0.46
CBX3-202ENST00000396386 Q8N7P7 452 aa12.16□□□□□ -0.46
CBX3-202ENST00000396386 OR8B3Q8NGG8 313 aa12.16□□□□□ -0.46
CBX3-202ENST00000396386 TNFRSF14Q92956 283 aa12.16□□□□□ -0.46
CBX3-202ENST00000396386 OR8B2Q96RD0 313 aa12.16□□□□□ -0.46
CBX3-202ENST00000396386 P2RX4Q99571 388 aa12.16□□□□□ -0.46
CBX3-202ENST00000396386 GCN1Q92616 2671 aaKnown RBP12.16□□□□□ -0.46
CBX3-202ENST00000396386 KALRNO60229 2985 aa12.16□□□□□ -0.46
CBX3-202ENST00000396386 H3BQ15 152 aa12.15□□□□□ -0.46
CBX3-202ENST00000396386 CYB5BO43169 146 aa12.15□□□□□ -0.46
CBX3-202ENST00000396386 FBP1P09467 338 aa12.15□□□□□ -0.46
CBX3-202ENST00000396386 OPRK1P41145 380 aa12.15□□□□□ -0.46
CBX3-202ENST00000396386 CDC34P49427 236 aaPredicted RBP12.15□□□□□ -0.46
CBX3-202ENST00000396386 C11orf71Q6IPW1 123 aa12.15□□□□□ -0.46
CBX3-202ENST00000396386 RBMS3Q6XE24 437 aaKnown RBP12.15□□□□□ -0.46
CBX3-202ENST00000396386 C11orf42Q8N5U0 333 aa12.15□□□□□ -0.46
CBX3-202ENST00000396386 C15orf54Q8N8G6 183 aa12.15□□□□□ -0.46
CBX3-202ENST00000396386 OR4C13Q8NGP0 309 aa12.15□□□□□ -0.46
CBX3-202ENST00000396386 OR4A5Q8NH83 315 aa12.15□□□□□ -0.46
CBX3-202ENST00000396386 VSTM2AQ8TAG5 236 aa12.15□□□□□ -0.46
CBX3-202ENST00000396386 NEIL1Q96FI4 390 aaPredicted RBP12.15□□□□□ -0.46
CBX3-202ENST00000396386 ANKHD1Q8IWZ3 2542 aaKnown RBP12.14□□□□□ -0.47
CBX3-202ENST00000396386 TEX50A0A1B0GTY4 177 aa12.14□□□□□ -0.47
CBX3-202ENST00000396386 RBP4P02753 201 aa12.14□□□□□ -0.47
CBX3-202ENST00000396386 USF1P22415 310 aaPredicted RBP12.14□□□□□ -0.47
CBX3-202ENST00000396386 TAGLN2P37802 199 aaKnown RBP12.14□□□□□ -0.47
CBX3-202ENST00000396386 DIAPH2-AS1Q14236 149 aa12.14□□□□□ -0.47
CBX3-202ENST00000396386 MGST2Q99735 147 aa12.14□□□□□ -0.47
CBX3-202ENST00000396386 NIPSNAP3BQ9BS92 247 aa12.14□□□□□ -0.47
CBX3-202ENST00000396386 GGTLC1Q9BX51 225 aa12.14□□□□□ -0.47
CBX3-202ENST00000396386 MANBALQ9NQG1 85 aa12.14□□□□□ -0.47
CBX3-202ENST00000396386 MIOXQ9UGB7 285 aa12.14□□□□□ -0.47
CBX3-202ENST00000396386 SPTA1P02549 2419 aa12.14□□□□□ -0.47
CBX3-202ENST00000396386 SEC14L6B5MCN3 397 aa12.14□□□□□ -0.47
CBX3-202ENST00000396386 FNDC10F2Z333 226 aa12.14□□□□□ -0.47
CBX3-202ENST00000396386 EIF3GO75821 320 aaKnown RBP eCLIP12.14□□□□□ -0.47
CBX3-202ENST00000396386 ATP5IP56385 69 aaPredicted RBP12.14□□□□□ -0.47
CBX3-202ENST00000396386 C8orf46Q8TAG6 207 aa12.14□□□□□ -0.47
CBX3-202ENST00000396386 NEU4Q8WWR8 484 aaPredicted RBP12.14□□□□□ -0.47
CBX3-202ENST00000396386 RAB24Q969Q5 203 aa12.14□□□□□ -0.47
CBX3-202ENST00000396386 TIMD4Q96H15 378 aa12.14□□□□□ -0.47
CBX3-202ENST00000396386 COMMD5Q9GZQ3 224 aa12.14□□□□□ -0.47
CBX3-202ENST00000396386 NPVFQ9HCQ7 196 aa12.14□□□□□ -0.47
CBX3-202ENST00000396386 IGHV2-26A0A0B4J1V2 119 aa12.13□□□□□ -0.47
CBX3-202ENST00000396386 HMGB3O15347 200 aaKnown RBP12.13□□□□□ -0.47
CBX3-202ENST00000396386 OPN1MWP04001 364 aa12.13□□□□□ -0.47
CBX3-202ENST00000396386 OPN1MW2P0DN77 364 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms