RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 PMCHL1Q16048 86 aa13.19□□□□□ -0.3
HMGA1-202ENST00000347617 PDLIM3Q53GG5 364 aaPredicted RBP13.19□□□□□ -0.3
HMGA1-202ENST00000347617 MYPOPQ86VE0 399 aaPredicted RBP13.19□□□□□ -0.3
HMGA1-202ENST00000347617 Q8N976 141 aa13.19□□□□□ -0.3
HMGA1-202ENST00000347617 OR52E5Q8NH55 327 aa13.19□□□□□ -0.3
HMGA1-202ENST00000347617 STARD4Q96DR4 205 aa13.19□□□□□ -0.3
HMGA1-202ENST00000347617 DKK4Q9UBT3 224 aa13.19□□□□□ -0.3
HMGA1-202ENST00000347617 LAMTOR2Q9Y2Q5 125 aa13.19□□□□□ -0.3
HMGA1-202ENST00000347617 MSRB2Q9Y3D2 182 aa13.19□□□□□ -0.3
HMGA1-202ENST00000347617 TRAV38-1A0A0B4J264 116 aa13.18□□□□□ -0.3
HMGA1-202ENST00000347617 A0A1W2PR80 420 aa13.18□□□□□ -0.3
HMGA1-202ENST00000347617 OOEPA6NGQ2 149 aa13.18□□□□□ -0.3
HMGA1-202ENST00000347617 K7EP13 123 aa13.18□□□□□ -0.3
HMGA1-202ENST00000347617 SIRPB1O00241 398 aa13.18□□□□□ -0.3
HMGA1-202ENST00000347617 EGR1P18146 543 aa13.18□□□□□ -0.3
HMGA1-202ENST00000347617 ZNF816Q0VGE8 651 aaPredicted RBP13.18□□□□□ -0.3
HMGA1-202ENST00000347617 MMD2Q8IY49 270 aa13.18□□□□□ -0.3
HMGA1-202ENST00000347617 NINJ1Q92982 152 aa13.18□□□□□ -0.3
HMGA1-202ENST00000347617 TXN2Q99757 166 aa13.18□□□□□ -0.3
HMGA1-202ENST00000347617 OR2D2Q9H210 308 aa13.18□□□□□ -0.3
HMGA1-202ENST00000347617 PTPRZ1P23471 2315 aaPredicted RBP13.18□□□□□ -0.3
HMGA1-202ENST00000347617 SCO2A0A1W2PP80 73 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 NKX6-3A6NJ46 265 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 RAMP3O60896 148 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 IGHV3-9P01782 118 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 HLA-DQA1P01909 254 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 PRRX1P54821 245 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 KRTDAPP60985 99 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 RHOBP62745 196 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 FOXC1Q12948 553 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 MORN2Q502X0 79 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 SLC35E4Q6ICL7 350 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 FAM214BQ7L5A3 538 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 PNKDQ8N490 385 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 EAF1Q96JC9 268 aaPredicted RBP13.17□□□□□ -0.3
HMGA1-202ENST00000347617 NRN1Q9NPD7 142 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 OSTCQ9NRP0 149 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 TBL2Q9Y4P3 447 aaKnown RBP13.17□□□□□ -0.3
HMGA1-202ENST00000347617 DMXL1Q9Y485 3027 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 FREM2Q5SZK8 3169 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 RBMXL2O75526 392 aaKnown RBP13.17□□□□□ -0.3
HMGA1-202ENST00000347617 NGFP01138 241 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 GCHFRP30047 84 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 IER3P46695 156 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 EDDM3BP56851 147 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 RPL30P62888 115 aaKnown RBP13.17□□□□□ -0.3
HMGA1-202ENST00000347617 CX3CL1P78423 397 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 C21orf62-AS1Q17RA5 79 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 KRTCAP3Q53RY4 240 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 NANOS1Q8WY41 292 aaKnown RBP13.17□□□□□ -0.3
HMGA1-202ENST00000347617 C22orf15Q8WYQ4 148 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 BCL2L2Q92843 193 aaPredicted RBP13.17□□□□□ -0.3
HMGA1-202ENST00000347617 ZDHHC16Q969W1 377 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 SCNM1Q9BWG6 230 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 GNB4Q9HAV0 340 aa13.17□□□□□ -0.3
HMGA1-202ENST00000347617 MRPL27Q9P0M9 148 aaKnown RBP13.17□□□□□ -0.3
HMGA1-202ENST00000347617 AMTP48728 403 aa13.16□□□□□ -0.3
HMGA1-202ENST00000347617 PTTG1IPP53801 180 aa13.16□□□□□ -0.3
HMGA1-202ENST00000347617 SPATA46Q5T0L3 261 aa13.16□□□□□ -0.3
HMGA1-202ENST00000347617 Q6ZN92 141 aa13.16□□□□□ -0.3
HMGA1-202ENST00000347617 SLC35D1Q9NTN3 355 aa13.16□□□□□ -0.3
HMGA1-202ENST00000347617 BET1LQ9NYM9 111 aa13.16□□□□□ -0.3
HMGA1-202ENST00000347617 V9GYV3 84 aa13.16□□□□□ -0.3
HMGA1-202ENST00000347617 PGPEP1LA6NFU8 196 aa13.15□□□□□ -0.3
HMGA1-202ENST00000347617 C17orf98A8MV24 154 aa13.15□□□□□ -0.3
HMGA1-202ENST00000347617 HYPMO75409 117 aa13.15□□□□□ -0.3
HMGA1-202ENST00000347617 CDKN1BP46527 198 aa13.15□□□□□ -0.3
HMGA1-202ENST00000347617 RPS20P60866 119 aaKnown RBP13.15□□□□□ -0.3
HMGA1-202ENST00000347617 RPL31P62899 125 aaKnown RBP13.15□□□□□ -0.3
HMGA1-202ENST00000347617 UBE2V1Q13404 147 aa13.15□□□□□ -0.3
HMGA1-202ENST00000347617 RAB31Q13636 194 aa13.15□□□□□ -0.3
HMGA1-202ENST00000347617 GABRA6Q16445 453 aa13.15□□□□□ -0.3
HMGA1-202ENST00000347617 TRAT1Q6PIZ9 186 aa13.15□□□□□ -0.3
HMGA1-202ENST00000347617 RASL11AQ6T310 242 aa13.15□□□□□ -0.3
HMGA1-202ENST00000347617 ZNF738Q8NE65 137 aa13.15□□□□□ -0.3
HMGA1-202ENST00000347617 GGTLC1Q9BX51 225 aa13.15□□□□□ -0.3
HMGA1-202ENST00000347617 SLC25A10Q9UBX3 287 aaPredicted RBP13.15□□□□□ -0.3
HMGA1-202ENST00000347617 ZNF324O75467 553 aaPredicted RBP13.15□□□□□ -0.31
HMGA1-202ENST00000347617 AMY1AP04745 511 aa13.15□□□□□ -0.31
HMGA1-202ENST00000347617 CD33P20138 364 aa13.15□□□□□ -0.31
HMGA1-202ENST00000347617 BMP5P22003 454 aa13.15□□□□□ -0.31
HMGA1-202ENST00000347617 MMDQ15546 238 aa13.15□□□□□ -0.31
HMGA1-202ENST00000347617 TREML4Q6UXN2 200 aa13.15□□□□□ -0.31
HMGA1-202ENST00000347617 GCNT2Q8N0V5 402 aa13.15□□□□□ -0.31
HMGA1-202ENST00000347617 RBMXL3Q8N7X1 1067 aaKnown RBP13.15□□□□□ -0.31
HMGA1-202ENST00000347617 CORO2AQ92828 525 aa13.15□□□□□ -0.31
HMGA1-202ENST00000347617 TRIB1Q96RU8 372 aa13.15□□□□□ -0.31
HMGA1-202ENST00000347617 NAT8BQ9UHF3 227 aa13.15□□□□□ -0.31
HMGA1-202ENST00000347617 ARHGAP21Q5T5U3 1957 aa13.14□□□□□ -0.31
HMGA1-202ENST00000347617 GTF3C1Q12789 2109 aa13.14□□□□□ -0.31
HMGA1-202ENST00000347617 ESPL1Q14674 2120 aa13.14□□□□□ -0.31
HMGA1-202ENST00000347617 FNDC10F2Z333 226 aa13.14□□□□□ -0.31
HMGA1-202ENST00000347617 K7EN84 100 aa13.14□□□□□ -0.31
HMGA1-202ENST00000347617 RHBDL1O75783 438 aa13.14□□□□□ -0.31
HMGA1-202ENST00000347617 GNG10P50151 68 aa13.14□□□□□ -0.31
HMGA1-202ENST00000347617 FOXG1P55316 489 aaPredicted RBP13.14□□□□□ -0.31
HMGA1-202ENST00000347617 RTL8BQ17RB0 113 aa13.14□□□□□ -0.31
HMGA1-202ENST00000347617 TMEM136Q6ZRR5 245 aa13.14□□□□□ -0.31
HMGA1-202ENST00000347617 STPG4Q8N801 248 aa13.14□□□□□ -0.31
HMGA1-202ENST00000347617 BORCS7Q96B45 105 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms