RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 C17orf100A8MU93 164 aa12.65□□□□□ -0.39
UPF3B-202ENST00000345865 LY86O95711 162 aa12.65□□□□□ -0.39
UPF3B-202ENST00000345865 SMIM6P0DI80 62 aa12.65□□□□□ -0.39
UPF3B-202ENST00000345865 HOXA5P20719 270 aa12.65□□□□□ -0.39
UPF3B-202ENST00000345865 NDUFA6P56556 154 aa12.65□□□□□ -0.39
UPF3B-202ENST00000345865 SLC25A48Q6ZT89 311 aaKnown RBP12.65□□□□□ -0.39
UPF3B-202ENST00000345865 C16orf82Q7Z2V1 217 aa12.65□□□□□ -0.39
UPF3B-202ENST00000345865 OR51G1Q8NGK1 321 aa12.65□□□□□ -0.39
UPF3B-202ENST00000345865 ABHD5Q8WTS1 349 aa12.65□□□□□ -0.39
UPF3B-202ENST00000345865 GGACTQ9BVM4 153 aa12.65□□□□□ -0.39
UPF3B-202ENST00000345865 LSM4Q9Y4Z0 139 aaKnown RBP12.65□□□□□ -0.39
UPF3B-202ENST00000345865 PHOX2AO14813 284 aa12.64□□□□□ -0.39
UPF3B-202ENST00000345865 NDUFB7P17568 137 aa12.64□□□□□ -0.39
UPF3B-202ENST00000345865 OPRK1P41145 380 aa12.64□□□□□ -0.39
UPF3B-202ENST00000345865 HSPE1P61604 102 aaKnown RBP12.64□□□□□ -0.39
UPF3B-202ENST00000345865 BSXQ3C1V8 233 aa12.64□□□□□ -0.39
UPF3B-202ENST00000345865 PRR30Q53SZ7 412 aaPredicted RBP12.64□□□□□ -0.39
UPF3B-202ENST00000345865 C1orf87Q8N0U7 546 aa12.64□□□□□ -0.39
UPF3B-202ENST00000345865 RAB9BQ9NP90 201 aa12.64□□□□□ -0.39
UPF3B-202ENST00000345865 ARFGEF3Q5TH69 2177 aa12.64□□□□□ -0.39
UPF3B-202ENST00000345865 C11orf94C9JXX5 98 aa12.63□□□□□ -0.39
UPF3B-202ENST00000345865 MPDU1O75352 247 aa12.63□□□□□ -0.39
UPF3B-202ENST00000345865 IRF2P14316 349 aa12.63□□□□□ -0.39
UPF3B-202ENST00000345865 ATP5G3P48201 142 aa12.63□□□□□ -0.39
UPF3B-202ENST00000345865 UBE2G2P60604 165 aa12.63□□□□□ -0.39
UPF3B-202ENST00000345865 FRZBQ92765 325 aa12.63□□□□□ -0.39
UPF3B-202ENST00000345865 RAB1CQ92928 201 aa12.63□□□□□ -0.39
UPF3B-202ENST00000345865 CTDSP1Q9GZU7 261 aa12.63□□□□□ -0.39
UPF3B-202ENST00000345865 PXMP4Q9Y6I8 212 aa12.63□□□□□ -0.39
UPF3B-202ENST00000345865 TRBV24-1A0A075B6N3 115 aa12.63□□□□□ -0.39
UPF3B-202ENST00000345865 CA2P00918 260 aa12.63□□□□□ -0.39
UPF3B-202ENST00000345865 PFN1P07737 140 aaKnown RBP12.63□□□□□ -0.39
UPF3B-202ENST00000345865 IL6RP08887 468 aaPredicted RBP12.63□□□□□ -0.39
UPF3B-202ENST00000345865 POU2AF1Q16633 256 aa12.63□□□□□ -0.39
UPF3B-202ENST00000345865 SSMEM1Q8WWF3 244 aa12.63□□□□□ -0.39
UPF3B-202ENST00000345865 NEIL1Q96FI4 390 aaPredicted RBP12.63□□□□□ -0.39
UPF3B-202ENST00000345865 ELOVL5Q9NYP7 299 aa12.63□□□□□ -0.39
UPF3B-202ENST00000345865 JKAMPQ9P055 326 aa12.63□□□□□ -0.39
UPF3B-202ENST00000345865 OPN1MWP04001 364 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 OPN1MW2P0DN77 364 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 OPN1MW3P0DN78 364 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 GFRALQ6UXV0 394 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 NECAP1Q8NC96 275 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 SLC24A4Q8NFF2 622 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 RND1Q92730 232 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 SSUH2Q9Y2M2 353 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 POLEQ07864 2286 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 A0A1W2PPV4 95 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 TRGC1P0CF51 173 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 CCL3L1P16619 93 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 NPY1RP25929 384 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 GNB1P62873 340 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 GFI1BQ5VTD9 330 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 OR13D1Q8NGV5 346 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 ADTRPQ96IZ2 230 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 DERL1Q9BUN8 251 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 ELOVL1Q9BW60 279 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 HINT2Q9BX68 163 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 NPVFQ9HCQ7 196 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 SLC25A10Q9UBX3 287 aaPredicted RBP12.62□□□□□ -0.39
UPF3B-202ENST00000345865 OR51B2Q9Y5P1 312 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 LINC00312Q9Y6C7 94 aa12.62□□□□□ -0.39
UPF3B-202ENST00000345865 TLN1Q9Y490 2541 aaKnown RBP12.61□□□□□ -0.39
UPF3B-202ENST00000345865 hADV38S2A0JD32 116 aa12.61□□□□□ -0.39
UPF3B-202ENST00000345865 S100A9P06702 114 aaKnown RBP12.61□□□□□ -0.39
UPF3B-202ENST00000345865 ARL14EPLP0DKL9 152 aa12.61□□□□□ -0.39
UPF3B-202ENST00000345865 TNFRSF1AP19438 455 aa12.61□□□□□ -0.39
UPF3B-202ENST00000345865 CDX1P47902 265 aaPredicted RBP12.61□□□□□ -0.39
UPF3B-202ENST00000345865 TMEM249Q2WGJ8 235 aa12.61□□□□□ -0.39
UPF3B-202ENST00000345865 C4orf17Q53FE4 359 aa12.61□□□□□ -0.39
UPF3B-202ENST00000345865 STAG3L2P0CL84 134 aa12.61□□□□□ -0.39
UPF3B-202ENST00000345865 STAG3L3P0CL85 134 aa12.61□□□□□ -0.39
UPF3B-202ENST00000345865 RPL31P62899 125 aaKnown RBP12.61□□□□□ -0.39
UPF3B-202ENST00000345865 ASCL5Q7RTU5 278 aa12.61□□□□□ -0.39
UPF3B-202ENST00000345865 FAM122AQ96E09 287 aa12.61□□□□□ -0.39
UPF3B-202ENST00000345865 NIT2Q9NQR4 276 aa12.61□□□□□ -0.39
UPF3B-202ENST00000345865 SLC35D1Q9NTN3 355 aa12.61□□□□□ -0.39
UPF3B-202ENST00000345865 ZNF835Q9Y2P0 537 aa12.61□□□□□ -0.39
UPF3B-202ENST00000345865 NDUFS6O75380 124 aaKnown RBP12.6□□□□□ -0.39
UPF3B-202ENST00000345865 HRASP01112 189 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 SPATA31B1PQ5VZV4 182 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 CST9LP1Q5W188 147 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 MOB3BQ86TA1 216 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 TCEAL7Q9BRU2 100 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 TMEM204Q9BSN7 226 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 SEPSECSQ9HD40 501 aaKnown RBP12.6□□□□□ -0.39
UPF3B-202ENST00000345865 AURKAIP1Q9NWT8 199 aaPredicted RBP12.6□□□□□ -0.39
UPF3B-202ENST00000345865 TMEM178BH3BS89 294 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 UPK2O00526 184 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 SOD3P08294 240 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 B2MP61769 119 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 CLEC12BQ2HXU8 276 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 TMEM200BQ69YZ2 307 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 LYPD2Q6UXB3 125 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 SPACA3Q8IXA5 215 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 WFIKKN1Q96NZ8 548 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 PYGO2Q9BRQ0 406 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 SAP30LQ9HAJ7 183 aa12.6□□□□□ -0.39
UPF3B-202ENST00000345865 J3QR06 171 aa12.59□□□□□ -0.39
UPF3B-202ENST00000345865 NDUFB4O95168 129 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms