RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 PSME4Q14997 1843 aa10.88□□□□□ -0.67
COL3A1-201ENST00000304636 PDCD11Q14690 1871 aaKnown RBP10.87□□□□□ -0.67
COL3A1-201ENST00000304636 ANOS1P23352 680 aa10.87□□□□□ -0.67
COL3A1-201ENST00000304636 ID1P41134 155 aa10.87□□□□□ -0.67
COL3A1-201ENST00000304636 LHFPL1Q86WI0 220 aa10.87□□□□□ -0.67
COL3A1-201ENST00000304636 REPIN1Q9BWE0 567 aaKnown RBP10.87□□□□□ -0.67
COL3A1-201ENST00000304636 CLDN16Q9Y5I7 305 aa10.87□□□□□ -0.67
COL3A1-201ENST00000304636 SCGB1A1P11684 91 aa10.87□□□□□ -0.67
COL3A1-201ENST00000304636 C1orf185Q5T7R7 199 aa10.87□□□□□ -0.67
COL3A1-201ENST00000304636 SRSF4Q08170 494 aaKnown RBP10.87□□□□□ -0.67
COL3A1-201ENST00000304636 GOLT1AQ6ZVE7 132 aa10.87□□□□□ -0.67
COL3A1-201ENST00000304636 ZNF414Q96IQ9 312 aa10.87□□□□□ -0.67
COL3A1-201ENST00000304636 IFI27L2Q9H2X8 130 aa10.87□□□□□ -0.67
COL3A1-201ENST00000304636 C7orf71A4D174 169 aa10.87□□□□□ -0.67
COL3A1-201ENST00000304636 IGFBP2P18065 325 aa10.87□□□□□ -0.67
COL3A1-201ENST00000304636 MFAP4P55083 255 aa10.87□□□□□ -0.67
COL3A1-201ENST00000304636 ALKBH7Q9BT30 221 aaPredicted RBP10.87□□□□□ -0.67
COL3A1-201ENST00000304636 SCN10AQ9Y5Y9 1956 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 A0A1W2PR77 199 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 PEX7O00628 323 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 CXCL1P09341 107 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 RPL39P5Q59GN2 51 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 FADS6Q8N9I5 356 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.86□□□□□ -0.67
COL3A1-201ENST00000304636 CDX4O14627 284 aaPredicted RBP10.86□□□□□ -0.67
COL3A1-201ENST00000304636 LDLRAD4O15165 306 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 ACP7Q6ZNF0 438 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 NDUFA2O43678 99 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 CTSSP25774 331 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 FAM131CQ96AQ9 280 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 LYZL4Q96KX0 146 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 PLXNA1Q9UIW2 1896 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 IGKV1D-13A0A0B4J2D9 117 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 GDF9O60383 454 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 IGKV1-13P0DP09 117 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 OR10J6PQ8NGY7 276 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 SAP25Q8TEE9 199 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 BRCA1P38398 1863 aaKnown RBP10.86□□□□□ -0.67
COL3A1-201ENST00000304636 PSMG4Q5JS54 123 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 GTF3AQ92664 365 aaKnown RBP10.86□□□□□ -0.67
COL3A1-201ENST00000304636 CHODLQ9H9P2 273 aa10.86□□□□□ -0.67
COL3A1-201ENST00000304636 A0A1W2PQM1 296 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 SUPT4H1P63272 117 aaKnown RBP10.85□□□□□ -0.67
COL3A1-201ENST00000304636 TCF23Q7RTU1 214 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 FAM19A2Q8N3H0 131 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 OR9G1Q8NH87 305 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 GBF1Q92538 1859 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 C1QTNF9BB2RNN3 333 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 H3BTX0 84 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 C1QTNF9P0C862 333 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 SAPCD1Q5SSQ6 148 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 ARL6IP6Q8N6S5 226 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 FLVCR1-AS1Q8TAF5 88 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 DNASE2BQ8WZ79 361 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 METTL26Q96S19 204 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 IGKV3-7A0A075B6H7 116 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 TRAV1-1A0A0B4J248 108 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 RBFOX2O43251 390 aaKnown RBP eCLIP10.85□□□□□ -0.67
COL3A1-201ENST00000304636 TIAF1O95411 115 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 NBEAP1P0C6P0 100 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 OSR1Q8TAX0 266 aaPredicted RBP10.85□□□□□ -0.67
COL3A1-201ENST00000304636 RPP21Q9H633 154 aaKnown RBP10.85□□□□□ -0.67
COL3A1-201ENST00000304636 RABAC1Q9UI14 185 aa10.85□□□□□ -0.67
COL3A1-201ENST00000304636 A0A1B0GV72 72 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 A0A1B0GW15 77 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 AMBPP02760 352 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 LINC00271P0C7V0 271 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 FMC1Q96HJ9 113 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 C16orf92Q96LL3 132 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 IGKV1D-8A0A087WSZ0 117 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 WNT9BO14905 357 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 REG1AP05451 166 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 CX3CL1P78423 397 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 LCTP09848 1927 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 APOHP02749 345 aaPredicted RBP10.84□□□□□ -0.67
COL3A1-201ENST00000304636 GFI1BQ5VTD9 330 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 GP6Q9HCN6 339 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 IL4P05112 153 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 OR10J3Q5JRS4 329 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 MBNL2Q5VZF2 373 aaKnown RBP10.84□□□□□ -0.67
COL3A1-201ENST00000304636 FAM166AQ6J272 317 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 MIR17HGQ75NE6 70 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 ZNF441Q8N8Z8 693 aa10.84□□□□□ -0.67
COL3A1-201ENST00000304636 ZNF324O75467 553 aaPredicted RBP10.83□□□□□ -0.67
COL3A1-201ENST00000304636 ST6GALNAC6Q969X2 333 aa10.83□□□□□ -0.67
COL3A1-201ENST00000304636 HILPDAQ9Y5L2 63 aa10.83□□□□□ -0.67
COL3A1-201ENST00000304636 H7C2G1 150 aa10.83□□□□□ -0.68
COL3A1-201ENST00000304636 RELQ04864 619 aaPredicted RBP10.83□□□□□ -0.68
COL3A1-201ENST00000304636 CDCP2Q5VXM1 449 aa10.83□□□□□ -0.68
COL3A1-201ENST00000304636 PRELID3AQ96N28 172 aa10.83□□□□□ -0.68
COL3A1-201ENST00000304636 A0A1B0GUT8 65 aa10.83□□□□□ -0.68
COL3A1-201ENST00000304636 MOSP00540 346 aa10.83□□□□□ -0.68
COL3A1-201ENST00000304636 CEACAM1P13688 526 aa10.83□□□□□ -0.68
COL3A1-201ENST00000304636 CACNG8Q8WXS5 425 aa10.83□□□□□ -0.68
COL3A1-201ENST00000304636 GNB1LQ9BYB4 327 aa10.83□□□□□ -0.68
COL3A1-201ENST00000304636 MST1P26927 711 aa10.83□□□□□ -0.68
COL3A1-201ENST00000304636 RAB9AP51151 201 aa10.83□□□□□ -0.68
COL3A1-201ENST00000304636 FOXC1Q12948 553 aa10.83□□□□□ -0.68
COL3A1-201ENST00000304636 OSTCQ9NRP0 149 aa10.83□□□□□ -0.68
COL3A1-201ENST00000304636 ZNF319Q9P2F9 582 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms