RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 ONECUT1Q9UBC0 465 aa9.38□□□□□ -0.91
CUX1-202ENST00000292538 A0A1W2PPH5 198 aa9.37□□□□□ -0.91
CUX1-202ENST00000292538 CA2P00918 260 aa9.37□□□□□ -0.91
CUX1-202ENST00000292538 APOA2P02652 100 aa9.37□□□□□ -0.91
CUX1-202ENST00000292538 KIR2DS2P43631 304 aa9.37□□□□□ -0.91
CUX1-202ENST00000292538 RPP30P78346 268 aaKnown RBP9.37□□□□□ -0.91
CUX1-202ENST00000292538 SERF2P84101 59 aa9.37□□□□□ -0.91
CUX1-202ENST00000292538 C10orf55Q5SWW7 151 aa9.37□□□□□ -0.91
CUX1-202ENST00000292538 MIC13Q5XKP0 118 aa9.37□□□□□ -0.91
CUX1-202ENST00000292538 UNQ6494/PRO21346Q6UXR6 183 aa9.37□□□□□ -0.91
CUX1-202ENST00000292538 KDF1Q8NAX2 398 aaPredicted RBP9.37□□□□□ -0.91
CUX1-202ENST00000292538 PLEKHA3Q9HB20 300 aa9.37□□□□□ -0.91
CUX1-202ENST00000292538 HRNRQ86YZ3 2850 aaPredicted RBP9.37□□□□□ -0.91
CUX1-202ENST00000292538 C15orf61A6NNL5 157 aa9.37□□□□□ -0.91
CUX1-202ENST00000292538 SRP19P09132 144 aaKnown RBP9.37□□□□□ -0.91
CUX1-202ENST00000292538 ZNF672Q499Z4 452 aaPredicted RBP9.37□□□□□ -0.91
CUX1-202ENST00000292538 RAB24Q969Q5 203 aa9.37□□□□□ -0.91
CUX1-202ENST00000292538 RPUSD4Q96CM3 377 aaKnown RBP9.37□□□□□ -0.91
CUX1-202ENST00000292538 FLYWCH2Q96CP2 140 aaKnown RBP9.37□□□□□ -0.91
CUX1-202ENST00000292538 SMCO4Q9NRQ5 59 aa9.37□□□□□ -0.91
CUX1-202ENST00000292538 hCG_1809904A0A1W2PP81 198 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 A0A1W2PPV4 95 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 A0A1W2PR64 198 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 A0A1W2PRV1 198 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 ACTL6BO94805 426 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 CRYBA1P05813 215 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 NPY1RP25929 384 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 HSPE1P61604 102 aaKnown RBP9.36□□□□□ -0.91
CUX1-202ENST00000292538 DHRS7BQ6IAN0 325 aaPredicted RBP9.36□□□□□ -0.91
CUX1-202ENST00000292538 SLC24A4Q8NFF2 622 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 CORO2AQ92828 525 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 RITA1Q96K30 269 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 NIPSNAP3BQ9BS92 247 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 BTBD17A6NE02 478 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 RBFOX2O43251 390 aaKnown RBP eCLIP9.36□□□□□ -0.916e-7■■■□□ 18.3
CUX1-202ENST00000292538 REG1AP05451 166 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 SOD3P08294 240 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 GATA2P23769 480 aaPredicted RBP9.36□□□□□ -0.91
CUX1-202ENST00000292538 CDKN1AP38936 164 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 GNB1P62873 340 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 MEF2CQ06413 473 aaPredicted RBP9.36□□□□□ -0.91
CUX1-202ENST00000292538 ATP6V1FQ16864 119 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 CST9LP1Q5W188 147 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 RAB39BQ96DA2 213 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 ADTRPQ96IZ2 230 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 PSMG3Q9BT73 122 aaPredicted RBP9.36□□□□□ -0.91
CUX1-202ENST00000292538 COMMD5Q9GZQ3 224 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 SIRT7Q9NRC8 400 aa9.36□□□□□ -0.91
CUX1-202ENST00000292538 C17orf112F2Z3M2 114 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 BCL2P10415 239 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 BTF3P20290 206 aaKnown RBP9.35□□□□□ -0.91
CUX1-202ENST00000292538 VDAC2P45880 294 aaPredicted RBP9.35□□□□□ -0.91
CUX1-202ENST00000292538 AKR1D1P51857 326 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 DLK1P80370 383 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 TGIF2LXQ8IUE1 241 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 TMEM170AQ8WVE7 144 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 SLC25A17O43808 307 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 NDUFS7O75251 213 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 ARF6P62330 175 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 GNB2P62879 340 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 TREML4Q6UXN2 200 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 OR4F5Q8NH21 305 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 OR4F4Q96R69 305 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 SEBOXQ9HB31 216 aaPredicted RBP9.35□□□□□ -0.91
CUX1-202ENST00000292538 AURKAIP1Q9NWT8 199 aaPredicted RBP9.35□□□□□ -0.91
CUX1-202ENST00000292538 H0YJW9 148 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 PAGE4O60829 102 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 IGHV1-8P0DP01 117 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 SSX8Q7RTT4 187 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.35□□□□□ -0.91
CUX1-202ENST00000292538 ACTR3CQ9C0K3 210 aaPredicted RBP9.35□□□□□ -0.91
CUX1-202ENST00000292538 MYO18BQ8IUG5 2567 aa9.35□□□□□ -0.91
CUX1-202ENST00000292538 IGHV3-21A0A0B4J1V1 117 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 PPIAL4CA0A0B4J2A2 164 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 TEX50A0A1B0GTY4 177 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 LOC102723971A0A1B0GUV8 181 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 E7EUB6 86 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 OR2C1O95371 312 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 SNRPCP09234 159 aaKnown RBP9.34□□□□□ -0.91
CUX1-202ENST00000292538 PPIAL4GP0DN37 164 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 GNLYP22749 145 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 CD24P25063 80 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 ZNF506Q5JVG8 444 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 ACY3Q96HD9 319 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 UBTD1Q9HAC8 227 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 TPSG1Q9NRR2 321 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 TMEM14BQ9NUH8 114 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 CFAP46Q8IYW2 2715 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 CYB5BO43169 146 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 KBTBD11O94819 623 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 CDC34P49427 236 aaPredicted RBP9.34□□□□□ -0.91
CUX1-202ENST00000292538 CLEC12BQ2HXU8 276 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 ZNF343Q6P1L6 599 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 CFAP161Q6P656 301 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 DPPA3Q6W0C5 159 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 OR10A7Q8NGE5 316 aa9.34□□□□□ -0.91
CUX1-202ENST00000292538 UPK2O00526 184 aa9.33□□□□□ -0.92
CUX1-202ENST00000292538 HSPB1P04792 205 aaKnown RBP9.33□□□□□ -0.92
CUX1-202ENST00000292538 EFNB3Q15768 340 aa9.33□□□□□ -0.92
CUX1-202ENST00000292538 ACOT6Q3I5F7 207 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 123.3 ms