RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 C5orf56Q8N8D9 126 aa11.42□□□□□ -0.58
UPF1-211ENST00000600868 RRNAD1Q96FB5 475 aaKnown RBP11.42□□□□□ -0.58
UPF1-211ENST00000600868 DUX5Q96PT3 197 aa11.42□□□□□ -0.58
UPF1-211ENST00000600868 OR51J1Q9H342 316 aa11.42□□□□□ -0.58
UPF1-211ENST00000600868 FBXL15Q9H469 300 aa11.42□□□□□ -0.58
UPF1-211ENST00000600868 TMEM140Q9NV12 185 aa11.42□□□□□ -0.58
UPF1-211ENST00000600868 METTL1Q9UBP6 276 aaKnown RBP11.42□□□□□ -0.58
UPF1-211ENST00000600868 TMED3Q9Y3Q3 217 aa11.42□□□□□ -0.58
UPF1-211ENST00000600868 MMP24Q9Y5R2 645 aa11.42□□□□□ -0.58
UPF1-211ENST00000600868 ALG5Q9Y673 324 aa11.42□□□□□ -0.58
UPF1-211ENST00000600868 ZFHX3Q15911 3703 aa11.41□□□□□ -0.58
UPF1-211ENST00000600868 UPK2O00526 184 aa11.41□□□□□ -0.58
UPF1-211ENST00000600868 GPR137BO60478 399 aa11.41□□□□□ -0.58
UPF1-211ENST00000600868 KBTBD11O94819 623 aa11.41□□□□□ -0.58
UPF1-211ENST00000600868 AMY1AP04745 511 aa11.41□□□□□ -0.58
UPF1-211ENST00000600868 FGF2P09038 288 aa11.41□□□□□ -0.58
UPF1-211ENST00000600868 RPL15P61313 204 aaKnown RBP11.41□□□□□ -0.58
UPF1-211ENST00000600868 UBA52P62987 128 aaKnown RBP11.41□□□□□ -0.58
UPF1-211ENST00000600868 PLGLAQ15195 96 aa11.41□□□□□ -0.58
UPF1-211ENST00000600868 LIN54Q6MZP7 749 aa11.41□□□□□ -0.58
UPF1-211ENST00000600868 PPP1R27Q86WC6 154 aa11.41□□□□□ -0.58
UPF1-211ENST00000600868 TMEM167AQ8TBQ9 72 aa11.41□□□□□ -0.58
UPF1-211ENST00000600868 RASL11BQ9BPW5 248 aa11.41□□□□□ -0.58
UPF1-211ENST00000600868 HLA-DRB1P01911 266 aa11.4□□□□□ -0.58
UPF1-211ENST00000600868 PRSS8Q16651 343 aa11.4□□□□□ -0.58
UPF1-211ENST00000600868 MRGPRG-AS1Q2M3A8 158 aa11.4□□□□□ -0.58
UPF1-211ENST00000600868 NMSQ5H8A3 153 aa11.4□□□□□ -0.58
UPF1-211ENST00000600868 Q6ZNX1 250 aa11.4□□□□□ -0.58
UPF1-211ENST00000600868 MMD2Q8IY49 270 aa11.4□□□□□ -0.58
UPF1-211ENST00000600868 RNASE11Q8TAA1 199 aaKnown RBP11.4□□□□□ -0.58
UPF1-211ENST00000600868 GPR146Q96CH1 333 aa11.4□□□□□ -0.58
UPF1-211ENST00000600868 TPSG1Q9NRR2 321 aa11.4□□□□□ -0.58
UPF1-211ENST00000600868 NIPBLQ6KC79 2804 aaeCLIP11.4□□□□□ -0.59
UPF1-211ENST00000600868 A0A0G2JRQ6 117 aa11.39□□□□□ -0.59
UPF1-211ENST00000600868 SNAPC5O75971 98 aa11.39□□□□□ -0.59
UPF1-211ENST00000600868 IFNA21P01568 189 aa11.39□□□□□ -0.59
UPF1-211ENST00000600868 HOXB5P09067 269 aa11.39□□□□□ -0.59
UPF1-211ENST00000600868 OR9G9P0C7N8 305 aa11.39□□□□□ -0.59
UPF1-211ENST00000600868 SLC25A6P12236 298 aa11.39□□□□□ -0.59
UPF1-211ENST00000600868 MAS1LP35410 378 aa11.39□□□□□ -0.59
UPF1-211ENST00000600868 RELBQ01201 579 aa11.39□□□□□ -0.59
UPF1-211ENST00000600868 GGNBP1Q5YKI7 109 aa11.39□□□□□ -0.59
UPF1-211ENST00000600868 UXS1Q8NBZ7 420 aa11.39□□□□□ -0.59
UPF1-211ENST00000600868 NPFFR1Q9GZQ6 430 aa11.39□□□□□ -0.59
UPF1-211ENST00000600868 RANBP3Q9H6Z4 567 aaPredicted RBP11.39□□□□□ -0.59
UPF1-211ENST00000600868 ZNF430Q9H8G1 570 aaPredicted RBP11.39□□□□□ -0.59
UPF1-211ENST00000600868 TRAV3A0A0B4J244 114 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 A0A1B0GU03 582 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 FAM181BA6NEQ2 426 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 TRIM77I1YAP6 450 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 FCN1O00602 326 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 SSNA1O43805 119 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 ADAP1O75689 374 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 HLA-GP17693 338 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 RPL8P62917 257 aaKnown RBP11.38□□□□□ -0.59
UPF1-211ENST00000600868 BLCAPP62952 87 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 PJVKQ0ZLH3 352 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 ZNF562Q6V9R5 426 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 Q6ZRM9 215 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 FOXRED2Q8IWF2 684 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 OR4A16Q8NH70 328 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 COA4Q9NYJ1 87 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 FKBP11Q9NYL4 201 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 PRNDQ9UKY0 176 aa11.38□□□□□ -0.59
UPF1-211ENST00000600868 C15orf61A6NNL5 157 aa11.37□□□□□ -0.59
UPF1-211ENST00000600868 CA2P00918 260 aa11.37□□□□□ -0.59
UPF1-211ENST00000600868 SULT1A3P0DMM9 295 aa11.37□□□□□ -0.59
UPF1-211ENST00000600868 SULT1A4P0DMN0 295 aa11.37□□□□□ -0.59
UPF1-211ENST00000600868 SSBP2P81877 361 aaPredicted RBP11.37□□□□□ -0.59
UPF1-211ENST00000600868 SMCO1Q147U7 214 aa11.37□□□□□ -0.59
UPF1-211ENST00000600868 IZUMO4Q1ZYL8 232 aa11.37□□□□□ -0.59
UPF1-211ENST00000600868 ZNF429Q86V71 674 aa11.37□□□□□ -0.59
UPF1-211ENST00000600868 CLCC1Q96S66 551 aa11.37□□□□□ -0.59
UPF1-211ENST00000600868 SPIN2AQ99865 258 aa11.37□□□□□ -0.59
UPF1-211ENST00000600868 SPIN2BQ9BPZ2 258 aa11.37□□□□□ -0.59
UPF1-211ENST00000600868 PRSS22Q9GZN4 317 aa11.37□□□□□ -0.59
UPF1-211ENST00000600868 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.37□□□□□ -0.59
UPF1-211ENST00000600868 TMEM14BQ9NUH8 114 aa11.37□□□□□ -0.59
UPF1-211ENST00000600868 CACNG5Q9UF02 275 aa11.37□□□□□ -0.59
UPF1-211ENST00000600868 FOXA2Q9Y261 457 aaPredicted RBP11.37□□□□□ -0.59
UPF1-211ENST00000600868 IGHV7-81A0A0B4J1V7 117 aa11.36□□□□□ -0.59
UPF1-211ENST00000600868 ACTL6BO94805 426 aa11.36□□□□□ -0.59
UPF1-211ENST00000600868 IGHG2P01859 326 aa11.36□□□□□ -0.59
UPF1-211ENST00000600868 COMPP49747 757 aaPredicted RBP11.36□□□□□ -0.59
UPF1-211ENST00000600868 CX3CL1P78423 397 aa11.36□□□□□ -0.59
UPF1-211ENST00000600868 C2orf68Q2NKX9 166 aa11.36□□□□□ -0.59
UPF1-211ENST00000600868 AARDQ4LEZ3 155 aa11.36□□□□□ -0.59
UPF1-211ENST00000600868 THOC7Q6I9Y2 204 aaKnown RBP11.36□□□□□ -0.59
UPF1-211ENST00000600868 HSPB9Q9BQS6 159 aa11.36□□□□□ -0.59
UPF1-211ENST00000600868 MED28Q9H204 178 aa11.36□□□□□ -0.59
UPF1-211ENST00000600868 CACFD1Q9UGQ2 172 aa11.36□□□□□ -0.59
UPF1-211ENST00000600868 ZNF257Q9Y2Q1 563 aa11.36□□□□□ -0.59
UPF1-211ENST00000600868 NSG2Q9Y328 171 aa11.36□□□□□ -0.59
UPF1-211ENST00000600868 TNCP24821 2201 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 SH2D7A6NKC9 451 aaPredicted RBP11.35□□□□□ -0.59
UPF1-211ENST00000600868 MPTX1A8MV57 137 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 KCNAB3O43448 404 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 PITX3O75364 302 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 RBMXL2O75526 392 aaKnown RBP11.35□□□□□ -0.59
UPF1-211ENST00000600868 CRYBA1P05813 215 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms