RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 MYOD1P15172 320 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 AREGP15514 252 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 PSMB6P28072 239 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 ARL3P36405 182 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 SPHARQ15513 63 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 ANKRD55Q3KP44 614 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 FAM106AQ4KMX7 169 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 BTNL8Q6UX41 500 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 SLC25A42Q86VD7 318 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 VKORC1L1Q8N0U8 176 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 KIR2DL5AQ8N109 375 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 OR56B1Q8NGI3 324 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 OR10J5Q8NHC4 309 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 KIR2DL5BQ8NHK3 375 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 TMEM167AQ8TBQ9 72 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 GATAD1Q8WUU5 269 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 PHLDA1Q8WV24 401 aaPredicted RBP4.51□□□□□ -1.69
VRK3-220ENST00000600259 ACOT12Q8WYK0 555 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 MAFIPQ8WZ33 124 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 ZNF414Q96IQ9 312 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 FYTTD1Q96QD9 318 aaKnown RBP4.51□□□□□ -1.69
VRK3-220ENST00000600259 OR51E2Q9H255 320 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 ELF5Q9UKW6 265 aaPredicted RBP4.51□□□□□ -1.69
VRK3-220ENST00000600259 RAB22AQ9UL26 194 aa4.51□□□□□ -1.69
VRK3-220ENST00000600259 KLK5Q9Y337 293 aaPredicted RBP4.51□□□□□ -1.69
VRK3-220ENST00000600259 DYNC1H1Q14204 4646 aaKnown RBP4.51□□□□□ -1.69
VRK3-220ENST00000600259 DNAH11Q96DT5 4516 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 IGKV1D-13A0A0B4J2D9 117 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 ZNF320A2RRD8 509 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 MFSD2BA6NFX1 497 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 TSPAN4O14817 238 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 MPPED1O15442 326 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 DENRO43583 198 aaKnown RBP4.5□□□□□ -1.69
VRK3-220ENST00000600259 FCGR3BO75015 233 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 HLA-DQB1P01920 261 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 CLEC3BP05452 202 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 IGKV1-13P0DP09 117 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 GALP22466 123 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 RPL27AP46776 148 aaKnown RBP4.5□□□□□ -1.69
VRK3-220ENST00000600259 ELLP55199 621 aaPredicted RBP4.5□□□□□ -1.69
VRK3-220ENST00000600259 CBX3Q13185 183 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 RAB11BQ15907 218 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 DEFB135Q30KP9 77 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 ODF3L2Q3SX64 289 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 ZNF585BQ52M93 769 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 OR4A47Q6IF82 309 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 OR2C3Q8N628 320 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 PACRGLQ8N7B6 248 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 BPIFB6Q8NFQ5 453 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 OR10R2Q8NGX6 335 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 ZNF502Q8TBZ5 544 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 TMEM203Q969S6 136 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 MARC2Q969Z3 335 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 RAB3CQ96E17 227 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 OR2A7Q96R45 310 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 ZNF436Q9C0F3 470 aaPredicted RBP4.5□□□□□ -1.69
VRK3-220ENST00000600259 C5orf66Q9H5L9 145 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 MAP6D1Q9H9H5 199 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 PLGRKTQ9HBL7 147 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 MRPL27Q9P0M9 148 aaKnown RBP4.5□□□□□ -1.69
VRK3-220ENST00000600259 RBMX2Q9Y388 322 aaKnown RBP4.5□□□□□ -1.69
VRK3-220ENST00000600259 PKHD1P08F94 4074 aa4.5□□□□□ -1.69
VRK3-220ENST00000600259 TRBV7-1A0A0A6YYK4 115 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 A0A1B0GVY2 172 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 J3QRK9 145 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 ACTL6BO94805 426 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 KBTBD11O94819 623 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 HIST1H1BP16401 226 aaKnown RBP4.49□□□□□ -1.69
VRK3-220ENST00000600259 HIST1H1DP16402 221 aaKnown RBP4.49□□□□□ -1.69
VRK3-220ENST00000600259 GNB3P16520 340 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 FCGR2BP31994 310 aaPredicted RBP4.49□□□□□ -1.69
VRK3-220ENST00000600259 MAS1LP35410 378 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 APOC4P55056 127 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 RPS25P62851 125 aaKnown RBP4.49□□□□□ -1.69
VRK3-220ENST00000600259 FABP5Q01469 135 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 ARFRP1Q13795 201 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 LIPKQ5VXJ0 399 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 ZNF773Q6PK81 442 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 C8orf59Q8N0T1 100 aaPredicted RBP4.49□□□□□ -1.69
VRK3-220ENST00000600259 MFSD4AQ8N468 514 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 ZNF645Q8N7E2 425 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 OR1L6Q8NGR2 347 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 EEF1AKMT3Q96AZ1 226 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 SPAG8Q99932 426 aaPredicted RBP4.49□□□□□ -1.69
VRK3-220ENST00000600259 MND1Q9BWT6 205 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 UBQLN2Q9UHD9 624 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 OR2W1Q9Y3N9 320 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 V9GY05 133 aa4.49□□□□□ -1.69
VRK3-220ENST00000600259 PKD1P98161 4303 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 TRAV3A0A0B4J244 114 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 IGHV3-35A0A0C4DH35 117 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 IGLC7A0M8Q6 106 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 PTGES3LE9PB15 166 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 F8W735 103 aaPredicted RBP4.48□□□□□ -1.69
VRK3-220ENST00000600259 CREBL2O60519 120 aaPredicted RBP4.48□□□□□ -1.69
VRK3-220ENST00000600259 REG1AP05451 166 aa4.48□□□□□ -1.69
VRK3-220ENST00000600259 RPL35AP18077 110 aaKnown RBP4.48□□□□□ -1.69
VRK3-220ENST00000600259 NFYAP23511 347 aaPredicted RBP4.48□□□□□ -1.69
VRK3-220ENST00000600259 PTBP1P26599 531 aaKnown RBP eCLIP4.48□□□□□ -1.69
VRK3-220ENST00000600259 ADMP35318 185 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms