RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 DHODHQ02127 395 aa11.32□□□□□ -0.6
VRK3-213ENST00000597215 PJVKQ0ZLH3 352 aa11.32□□□□□ -0.6
VRK3-213ENST00000597215 ASAH1Q13510 395 aa11.32□□□□□ -0.6
VRK3-213ENST00000597215 FXYD3Q14802 87 aa11.32□□□□□ -0.6
VRK3-213ENST00000597215 TRIM16LQ309B1 348 aa11.32□□□□□ -0.6
VRK3-213ENST00000597215 SP6Q3SY56 376 aa11.32□□□□□ -0.6
VRK3-213ENST00000597215 OR4A47Q6IF82 309 aa11.32□□□□□ -0.6
VRK3-213ENST00000597215 CENPSQ8N2Z9 138 aa11.32□□□□□ -0.6
VRK3-213ENST00000597215 ARPC1AQ92747 370 aa11.32□□□□□ -0.6
VRK3-213ENST00000597215 ZNF747Q9BV97 191 aa11.32□□□□□ -0.6
VRK3-213ENST00000597215 ZNF430Q9H8G1 570 aaPredicted RBP11.32□□□□□ -0.6
VRK3-213ENST00000597215 TMEM140Q9NV12 185 aa11.32□□□□□ -0.6
VRK3-213ENST00000597215 LINC00527Q9UJ94 153 aa11.32□□□□□ -0.6
VRK3-213ENST00000597215 TBC1D24Q9ULP9 559 aa11.32□□□□□ -0.6
VRK3-213ENST00000597215 KCNIP3Q9Y2W7 256 aa11.32□□□□□ -0.6
VRK3-213ENST00000597215 TNCP24821 2201 aa11.32□□□□□ -0.6
VRK3-213ENST00000597215 PSMB11A5LHX3 300 aa11.31□□□□□ -0.6
VRK3-213ENST00000597215 ARPC1BO15143 372 aaKnown RBP11.31□□□□□ -0.6
VRK3-213ENST00000597215 ATG12O94817 140 aa11.31□□□□□ -0.6
VRK3-213ENST00000597215 ANXA3P12429 323 aa11.31□□□□□ -0.6
VRK3-213ENST00000597215 VDAC1P21796 283 aa11.31□□□□□ -0.6
VRK3-213ENST00000597215 G6PCP35575 357 aa11.31□□□□□ -0.6
VRK3-213ENST00000597215 CRIP2P52943 208 aaPredicted RBP11.31□□□□□ -0.6
VRK3-213ENST00000597215 SLC35B1P78383 322 aa11.31□□□□□ -0.6
VRK3-213ENST00000597215 TNXAQ16473 311 aa11.31□□□□□ -0.6
VRK3-213ENST00000597215 MRGPRG-AS1Q2M3A8 158 aa11.31□□□□□ -0.6
VRK3-213ENST00000597215 TMEM128Q5BJH2 165 aa11.31□□□□□ -0.6
VRK3-213ENST00000597215 CADM3Q8N126 398 aa11.31□□□□□ -0.6
VRK3-213ENST00000597215 SPATA3Q8NHX4 192 aa11.31□□□□□ -0.6
VRK3-213ENST00000597215 GRPEL2Q8TAA5 225 aa11.31□□□□□ -0.6
VRK3-213ENST00000597215 WIPF2Q8TF74 440 aaPredicted RBP11.31□□□□□ -0.6
VRK3-213ENST00000597215 GALNT14Q96FL9 552 aa11.31□□□□□ -0.6
VRK3-213ENST00000597215 TSC22D3Q99576 134 aa11.31□□□□□ -0.6
VRK3-213ENST00000597215 TMEM222Q9H0R3 208 aa11.31□□□□□ -0.6
VRK3-213ENST00000597215 IGKV1-39P01597 117 aa11.3□□□□□ -0.6
VRK3-213ENST00000597215 IGKV1D-39P04432 117 aa11.3□□□□□ -0.6
VRK3-213ENST00000597215 FGF2P09038 288 aa11.3□□□□□ -0.6
VRK3-213ENST00000597215 SLC6A1P30531 599 aa11.3□□□□□ -0.6
VRK3-213ENST00000597215 MAS1LP35410 378 aa11.3□□□□□ -0.6
VRK3-213ENST00000597215 DEFA1P59665 94 aa11.3□□□□□ -0.6
VRK3-213ENST00000597215 DEFA3P59666 94 aa11.3□□□□□ -0.6
VRK3-213ENST00000597215 UBE2MP61081 183 aaKnown RBP11.3□□□□□ -0.6
VRK3-213ENST00000597215 RPL8P62917 257 aaKnown RBP11.3□□□□□ -0.6
VRK3-213ENST00000597215 SSBP2P81877 361 aaPredicted RBP11.3□□□□□ -0.6
VRK3-213ENST00000597215 IFITM3Q01628 133 aa11.3□□□□□ -0.6
VRK3-213ENST00000597215 TMEM267Q0VDI3 215 aaPredicted RBP11.3□□□□□ -0.6
VRK3-213ENST00000597215 SLC25A42Q86VD7 318 aa11.3□□□□□ -0.6
VRK3-213ENST00000597215 SGMS2Q8NHU3 365 aa11.3□□□□□ -0.6
VRK3-213ENST00000597215 GLYATL2Q8WU03 294 aa11.3□□□□□ -0.6
VRK3-213ENST00000597215 SEC22AQ96IW7 307 aa11.3□□□□□ -0.6
VRK3-213ENST00000597215 FBXO7Q9Y3I1 522 aa11.3□□□□□ -0.6
VRK3-213ENST00000597215 TRAV41A0A0B4J266 112 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 FAM240BA0A1B0GVZ2 78 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 UPK2O00526 184 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 FBXO24O75426 580 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 SNAPC5O75971 98 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 CDS2O95674 445 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 TCRBP04435 133 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 IL6RP08887 468 aaPredicted RBP11.29□□□□□ -0.6
VRK3-213ENST00000597215 EGR2P11161 476 aaPredicted RBP11.29□□□□□ -0.6
VRK3-213ENST00000597215 HLA-GP17693 338 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 AKR1C2P52895 323 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 KRTAP10-3P60369 221 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 SUPT4H1P63272 117 aaKnown RBP11.29□□□□□ -0.6
VRK3-213ENST00000597215 TMEM187Q14656 261 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 ECSCRQ19T08 205 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 SHISA2Q6UWI4 295 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 H2BFWTQ7Z2G1 175 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 ZNF329Q86UD4 541 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 ZNF695Q8IW36 515 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 COMMD1Q8N668 190 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 OR5AU1Q8NGC0 362 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 OR4X2Q8NGF9 303 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 SRSF12Q8WXF0 261 aaKnown RBP11.29□□□□□ -0.6
VRK3-213ENST00000597215 RBPMSQ93062 196 aaKnown RBP11.29□□□□□ -0.6
VRK3-213ENST00000597215 CITED1Q99966 193 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 FAM103A1Q9BTL3 118 aaKnown RBP11.29□□□□□ -0.6
VRK3-213ENST00000597215 C20orf85Q9H1P6 137 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 FLVCR2Q9UPI3 526 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 NUBP2Q9Y5Y2 271 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 WSB1Q9Y6I7 421 aa11.29□□□□□ -0.6
VRK3-213ENST00000597215 PIGBOS1A0A0B4J2F0 54 aa11.28□□□□□ -0.6
VRK3-213ENST00000597215 G3V318 75 aa11.28□□□□□ -0.6
VRK3-213ENST00000597215 VAMP1P23763 118 aa11.28□□□□□ -0.6
VRK3-213ENST00000597215 RPL27AP46776 148 aaKnown RBP11.28□□□□□ -0.6
VRK3-213ENST00000597215 SRPXP78539 464 aa11.28□□□□□ -0.6
VRK3-213ENST00000597215 CFHR3Q02985 330 aa11.28□□□□□ -0.6
VRK3-213ENST00000597215 AKIRIN2Q53H80 203 aa11.28□□□□□ -0.6
VRK3-213ENST00000597215 UNQ5815/PRO19632Q6UWF5 114 aa11.28□□□□□ -0.6
VRK3-213ENST00000597215 RNASE11Q8TAA1 199 aaKnown RBP11.28□□□□□ -0.6
VRK3-213ENST00000597215 ENKURQ8TC29 256 aa11.28□□□□□ -0.6
VRK3-213ENST00000597215 IL22RA2Q969J5 263 aa11.28□□□□□ -0.6
VRK3-213ENST00000597215 RRNAD1Q96FB5 475 aaKnown RBP11.28□□□□□ -0.6
VRK3-213ENST00000597215 TMEM56Q96MV1 263 aa11.28□□□□□ -0.6
VRK3-213ENST00000597215 PHB2Q99623 299 aa11.28□□□□□ -0.6
VRK3-213ENST00000597215 SPIN2AQ99865 258 aa11.28□□□□□ -0.6
VRK3-213ENST00000597215 SPIN2BQ9BPZ2 258 aa11.28□□□□□ -0.6
VRK3-213ENST00000597215 PRNDQ9UKY0 176 aa11.28□□□□□ -0.6
VRK3-213ENST00000597215 TMEM56-RWDD3S4R434 201 aa11.28□□□□□ -0.6
VRK3-213ENST00000597215 STAB1Q9NY15 2570 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms