RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 GRNP28799 593 aaKnown RBP16.14■□□□□ 0.17
CLIP3-206ENST00000593074 AVPI1Q5T686 147 aa16.14■□□□□ 0.17
CLIP3-206ENST00000593074 OR4A47Q6IF82 309 aa16.14■□□□□ 0.17
CLIP3-206ENST00000593074 TCF19Q9Y242 345 aa16.14■□□□□ 0.17
CLIP3-206ENST00000593074 SMG1Q96Q15 3661 aaKnown RBP16.14■□□□□ 0.17
CLIP3-206ENST00000593074 PRSS46E5RG02 174 aa16.13■□□□□ 0.17
CLIP3-206ENST00000593074 PLAUP00749 431 aa16.13■□□□□ 0.17
CLIP3-206ENST00000593074 FOLR2P14207 255 aa16.13■□□□□ 0.17
CLIP3-206ENST00000593074 DAOP14920 347 aa16.13■□□□□ 0.17
CLIP3-206ENST00000593074 HEPN1Q6WQI6 88 aa16.13■□□□□ 0.17
CLIP3-206ENST00000593074 CA5BP1Q8WTZ4 195 aa16.13■□□□□ 0.17
CLIP3-206ENST00000593074 ZNF714Q96N38 554 aa16.13■□□□□ 0.17
CLIP3-206ENST00000593074 HEYLQ9NQ87 328 aaPredicted RBP16.13■□□□□ 0.17
CLIP3-206ENST00000593074 WDR83OSQ9Y284 106 aa16.13■□□□□ 0.17
CLIP3-206ENST00000593074 ZFP92A6NM28 416 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 IFNA10P01566 189 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 CRYBA1P05813 215 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 HNF4GQ14541 408 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 Q8N7P7 452 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 HIST1H2BAQ96A08 127 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 GGACTQ9BVM4 153 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 TET2Q6N021 2002 aaPredicted RBP16.12■□□□□ 0.17
CLIP3-206ENST00000593074 CTXND1A0A1B0GTU2 59 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 HRASP01112 189 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 CT45A6P0DMU7 189 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 CT45A5P0DMU8 189 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 CT45A7P0DMV0 189 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 CD1BP29016 333 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 LY6DQ14210 128 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 FFAR4Q5NUL3 377 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 TMEM200BQ69YZ2 307 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 ZNF833PQ6ZTB9 187 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 ZNF709Q8N972 641 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 SLC39A9Q9NUM3 307 aa16.12■□□□□ 0.17
CLIP3-206ENST00000593074 C17orf112F2Z3M2 114 aa16.11■□□□□ 0.17
CLIP3-206ENST00000593074 RRHO14718 337 aa16.11■□□□□ 0.17
CLIP3-206ENST00000593074 IL6RP08887 468 aaPredicted RBP16.11■□□□□ 0.17
CLIP3-206ENST00000593074 CEBPGP53567 150 aa16.11■□□□□ 0.17
CLIP3-206ENST00000593074 TMEM170AQ8WVE7 144 aa16.11■□□□□ 0.17
CLIP3-206ENST00000593074 LHX4Q969G2 390 aa16.11■□□□□ 0.17
CLIP3-206ENST00000593074 P2RX4Q99571 388 aa16.11■□□□□ 0.17
CLIP3-206ENST00000593074 ROS1P08922 2347 aa16.11■□□□□ 0.17
CLIP3-206ENST00000593074 IFNA1P01562 189 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 CCL3L1P16619 93 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 HOXA1P49639 335 aaPredicted RBP16.1■□□□□ 0.17
CLIP3-206ENST00000593074 RTL8BQ17RB0 113 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 FAM90A2PQ658T7 463 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 OR10G9Q8NGN4 311 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 OR10G7Q8NGN6 311 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 RAB39BQ96DA2 213 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 NIPSNAP3BQ9BS92 247 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 ZNRD1Q9P1U0 126 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 KAAG1Q9UBP8 84 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 VAX2Q9UIW0 290 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 NDUFB3O43676 98 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 MPDU1O75352 247 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 MT-ND4LP03901 98 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 ERVFRD-1P60508 538 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 HSPE1P61604 102 aaKnown RBP16.1■□□□□ 0.17
CLIP3-206ENST00000593074 CDSNQ15517 529 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 LRRC10Q5BKY1 277 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 LYPD2Q6UXB3 125 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 SLC35E3Q7Z769 313 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 ISOC2Q96AB3 205 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 SLC25A22Q9H936 323 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 CTSZQ9UBR2 303 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 KALRNO60229 2985 aa16.1■□□□□ 0.17
CLIP3-206ENST00000593074 SLC35D1Q9NTN3 355 aa16.09■□□□□ 0.17
CLIP3-206ENST00000593074 IGHV1-69-2A0A0G2JMI3 117 aa16.09■□□□□ 0.17
CLIP3-206ENST00000593074 A0A1W2PPE2 198 aa16.09■□□□□ 0.17
CLIP3-206ENST00000593074 SOX15O60248 233 aa16.09■□□□□ 0.17
CLIP3-206ENST00000593074 IGKV1-16P04430 117 aa16.09■□□□□ 0.17
CLIP3-206ENST00000593074 DLK1P80370 383 aa16.09■□□□□ 0.17
CLIP3-206ENST00000593074 OR13D1Q8NGV5 346 aa16.09■□□□□ 0.17
CLIP3-206ENST00000593074 ACTR3CQ9C0K3 210 aaPredicted RBP16.09■□□□□ 0.17
CLIP3-206ENST00000593074 YLPM1P49750 1951 aaKnown RBP16.09■□□□□ 0.17
CLIP3-206ENST00000593074 A0A087WWC5 75 aa16.08■□□□□ 0.16
CLIP3-206ENST00000593074 A0A1W2PPH5 198 aa16.08■□□□□ 0.16
CLIP3-206ENST00000593074 SIAH2O43255 324 aa16.08■□□□□ 0.16
CLIP3-206ENST00000593074 RAB11AP62491 216 aa16.08■□□□□ 0.16
CLIP3-206ENST00000593074 RNF212Q495C1 297 aa16.08■□□□□ 0.16
CLIP3-206ENST00000593074 ABHD12Q8N2K0 398 aa16.08■□□□□ 0.16
CLIP3-206ENST00000593074 MUC15Q8N387 334 aa16.08■□□□□ 0.16
CLIP3-206ENST00000593074 H1FXQ92522 213 aaKnown RBP16.08■□□□□ 0.16
CLIP3-206ENST00000593074 TVP23CQ96ET8 276 aa16.08■□□□□ 0.16
CLIP3-206ENST00000593074 PRNDQ9UKY0 176 aa16.08■□□□□ 0.16
CLIP3-206ENST00000593074 DVL1O14640 695 aa16.07■□□□□ 0.16
CLIP3-206ENST00000593074 EIF3GO75821 320 aaKnown RBP eCLIP16.07■□□□□ 0.16
CLIP3-206ENST00000593074 LOXP28300 417 aaPredicted RBP16.07■□□□□ 0.16
CLIP3-206ENST00000593074 RAB13P51153 203 aa16.07■□□□□ 0.16
CLIP3-206ENST00000593074 TREML4Q6UXN2 200 aa16.07■□□□□ 0.16
CLIP3-206ENST00000593074 RBMS3Q6XE24 437 aaKnown RBP16.07■□□□□ 0.16
CLIP3-206ENST00000593074 C8orf31Q8N9H6 132 aa16.07■□□□□ 0.16
CLIP3-206ENST00000593074 ZNF596Q8TC21 504 aa16.07■□□□□ 0.16
CLIP3-206ENST00000593074 ZNF257Q9Y2Q1 563 aa16.07■□□□□ 0.16
CLIP3-206ENST00000593074 ARFGEF3Q5TH69 2177 aa16.07■□□□□ 0.16
CLIP3-206ENST00000593074 PKDREJQ9NTG1 2253 aa16.07■□□□□ 0.16
CLIP3-206ENST00000593074 PLA2G5P39877 138 aa16.07■□□□□ 0.16
CLIP3-206ENST00000593074 ACOT6Q3I5F7 207 aaPredicted RBP16.07■□□□□ 0.16
CLIP3-206ENST00000593074 ZNF672Q499Z4 452 aaPredicted RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms