RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 DYNAPQ8N1N2 210 aa1.01□□□□□ -2.25
SS18-214ENST00000580003 UMODL1-AS1Q8N2C9 162 aa1.01□□□□□ -2.25
SS18-214ENST00000580003 CCL13Q99616 98 aa1.01□□□□□ -2.25
SS18-214ENST00000580003 AHNAKQ09666 5890 aaKnown RBP1□□□□□ -2.25
SS18-214ENST00000580003 HAAOP46952 286 aa1□□□□□ -2.25
SS18-214ENST00000580003 SAPCD1Q5SSQ6 148 aa1□□□□□ -2.25
SS18-214ENST00000580003 C9orf163Q8N9P6 203 aa1□□□□□ -2.25
SS18-214ENST00000580003 REG4Q9BYZ8 158 aa1□□□□□ -2.25
SS18-214ENST00000580003 SLC22A4Q9H015 551 aa1□□□□□ -2.25
SS18-214ENST00000580003 XAGE1AQ9HD64 81 aa1□□□□□ -2.25
SS18-214ENST00000580003 ARFGEF3Q5TH69 2177 aa1□□□□□ -2.25
SS18-214ENST00000580003 HEATR5BQ9P2D3 2071 aa1□□□□□ -2.25
SS18-214ENST00000580003 PTPRSQ13332 1948 aa0.99□□□□□ -2.25
SS18-214ENST00000580003 COX7A2LO14548 114 aa0.99□□□□□ -2.25
SS18-214ENST00000580003 PET100P0DJ07 73 aa0.99□□□□□ -2.25
SS18-214ENST00000580003 CD40LGP29965 261 aa0.99□□□□□ -2.25
SS18-214ENST00000580003 RPL30P62888 115 aaKnown RBP0.99□□□□□ -2.25
SS18-214ENST00000580003 OR8B3Q8NGG8 313 aa0.99□□□□□ -2.25
SS18-214ENST00000580003 GNPNAT1Q96EK6 184 aaPredicted RBP0.99□□□□□ -2.25
SS18-214ENST00000580003 SMARCA4P51532 1647 aa0.98□□□□□ -2.25
SS18-214ENST00000580003 IBA57-AS1B1ANH7 110 aa0.98□□□□□ -2.25
SS18-214ENST00000580003 GEMIN2O14893 280 aaKnown RBP0.98□□□□□ -2.25
SS18-214ENST00000580003 APOMO95445 188 aa0.98□□□□□ -2.25
SS18-214ENST00000580003 MSMBP08118 114 aa0.98□□□□□ -2.25
SS18-214ENST00000580003 HADHBP55084 474 aaKnown RBP0.98□□□□□ -2.25
SS18-214ENST00000580003 PMS2P3Q13401 168 aa0.98□□□□□ -2.25
SS18-214ENST00000580003 FAM27BQ5VT28 67 aa0.98□□□□□ -2.25
SS18-214ENST00000580003 PACRGQ96M98 296 aaPredicted RBP0.98□□□□□ -2.25
SS18-214ENST00000580003 SDCBPO00560 298 aaPredicted RBP0.97□□□□□ -2.25
SS18-214ENST00000580003 CCL5P13501 91 aa0.97□□□□□ -2.25
SS18-214ENST00000580003 CLDN12P56749 244 aa0.97□□□□□ -2.25
SS18-214ENST00000580003 NDUFA5Q16718 116 aa0.97□□□□□ -2.25
SS18-214ENST00000580003 C10orf55Q5SWW7 151 aa0.97□□□□□ -2.25
SS18-214ENST00000580003 DNM1P34Q6PK57 102 aa0.97□□□□□ -2.25
SS18-214ENST00000580003 GID4Q8IVV7 300 aa0.97□□□□□ -2.25
SS18-214ENST00000580003 FAM19A2Q8N3H0 131 aa0.97□□□□□ -2.25
SS18-214ENST00000580003 ASB13Q8WXK3 278 aa0.97□□□□□ -2.25
SS18-214ENST00000580003 MS4A6AQ9H2W1 248 aa0.97□□□□□ -2.25
SS18-214ENST00000580003 HRASLSQ9HDD0 168 aa0.97□□□□□ -2.25
SS18-214ENST00000580003 PRELID1Q9Y255 219 aa0.97□□□□□ -2.25
SS18-214ENST00000580003 TMEM213A2RRL7 107 aa0.96□□□□□ -2.26
SS18-214ENST00000580003 GOLGA6L10A6NI86 522 aa0.96□□□□□ -2.26
SS18-214ENST00000580003 UBBP0CG47 229 aa0.96□□□□□ -2.26
SS18-214ENST00000580003 HIST1H1CP16403 213 aaKnown RBP0.96□□□□□ -2.26
SS18-214ENST00000580003 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.96□□□□□ -2.26
SS18-214ENST00000580003 SYCE1Q8N0S2 351 aa0.96□□□□□ -2.26
SS18-214ENST00000580003 MRPL57Q9BQC6 102 aaKnown RBP0.96□□□□□ -2.26
SS18-214ENST00000580003 SETD5Q9C0A6 1442 aa0.96□□□□□ -2.26
SS18-214ENST00000580003 CACNA1BQ00975 2339 aa0.95□□□□□ -2.26
SS18-214ENST00000580003 DDTP30046 118 aa0.95□□□□□ -2.26
SS18-214ENST00000580003 CDK10Q15131 360 aa0.95□□□□□ -2.26
SS18-214ENST00000580003 SLC22A24Q8N4F4 322 aa0.95□□□□□ -2.26
SS18-214ENST00000580003 TBC1D19Q8N5T2 526 aa0.95□□□□□ -2.26
SS18-214ENST00000580003 UBL4BQ8N7F7 174 aa0.95□□□□□ -2.26
SS18-214ENST00000580003 ZNF676Q8N7Q3 588 aa0.95□□□□□ -2.26
SS18-214ENST00000580003 OR2T27Q8NH04 317 aa0.95□□□□□ -2.26
SS18-214ENST00000580003 SERPINI1Q99574 410 aa0.95□□□□□ -2.26
SS18-214ENST00000580003 EURLQ9NYK6 297 aa0.95□□□□□ -2.26
SS18-214ENST00000580003 TIMM22Q9Y584 194 aa0.95□□□□□ -2.26
SS18-214ENST00000580003 GMEB1Q9Y692 573 aa0.95□□□□□ -2.26
SS18-214ENST00000580003 TRAPPC2LH3BP13 241 aa0.94□□□□□ -2.26
SS18-214ENST00000580003 ITGB1BP1O14713 200 aa0.94□□□□□ -2.26
SS18-214ENST00000580003 SDHAF4Q5VUM1 108 aa0.94□□□□□ -2.26
SS18-214ENST00000580003 SBSNQ6UWP8 590 aa0.94□□□□□ -2.26
SS18-214ENST00000580003 DHFR2Q86XF0 187 aa0.94□□□□□ -2.26
SS18-214ENST00000580003 HAVCR2Q8TDQ0 301 aa0.94□□□□□ -2.26
SS18-214ENST00000580003 SPANXB1Q9NS25 103 aaPredicted RBP0.94□□□□□ -2.26
SS18-214ENST00000580003 LHFPL6Q9Y693 200 aa0.94□□□□□ -2.26
SS18-214ENST00000580003 TONSLQ96HA7 1378 aa0.94□□□□□ -2.26
SS18-214ENST00000580003 NSA2O95478 260 aaKnown RBP0.93□□□□□ -2.26
SS18-214ENST00000580003 CXCR4P61073 352 aa0.93□□□□□ -2.26
SS18-214ENST00000580003 SSX8Q7RTT4 187 aa0.93□□□□□ -2.26
SS18-214ENST00000580003 C12orf29Q8N999 325 aa0.93□□□□□ -2.26
SS18-214ENST00000580003 DERL2Q9GZP9 239 aa0.93□□□□□ -2.26
SS18-214ENST00000580003 SPACA1Q9HBV2 294 aa0.93□□□□□ -2.26
SS18-214ENST00000580003 GPR84Q9NQS5 396 aa0.93□□□□□ -2.26
SS18-214ENST00000580003 GLI3P10071 1580 aa0.92□□□□□ -2.26
SS18-214ENST00000580003 GREB1Q4ZG55 1949 aa0.92□□□□□ -2.26
SS18-214ENST00000580003 TRBV10-2A0A0K0K1G8 114 aa0.92□□□□□ -2.26
SS18-214ENST00000580003 TRPC5OSA6NMA1 111 aa0.92□□□□□ -2.26
SS18-214ENST00000580003 CSN1S1P47710 185 aa0.92□□□□□ -2.26
SS18-214ENST00000580003 RAB13P51153 203 aa0.92□□□□□ -2.26
SS18-214ENST00000580003 FAM19A5Q7Z5A7 132 aaPredicted RBP0.92□□□□□ -2.26
SS18-214ENST00000580003 CD302Q8IX05 232 aa0.92□□□□□ -2.26
SS18-214ENST00000580003 ZNF565Q8N9K5 539 aa0.92□□□□□ -2.26
SS18-214ENST00000580003 DHRS9Q9BPW9 319 aa0.92□□□□□ -2.26
SS18-214ENST00000580003 BBS2Q9BXC9 721 aa0.92□□□□□ -2.26
SS18-214ENST00000580003 TRABDQ9H4I3 376 aa0.92□□□□□ -2.26
SS18-214ENST00000580003 TINCRA0A1B0GVN0 87 aa0.91□□□□□ -2.26
SS18-214ENST00000580003 LEPROTO15243 131 aa0.91□□□□□ -2.26
SS18-214ENST00000580003 SLC22A1O15245 554 aa0.91□□□□□ -2.26
SS18-214ENST00000580003 SGMS2Q8NHU3 365 aa0.91□□□□□ -2.26
SS18-214ENST00000580003 JOSD2Q8TAC2 188 aa0.91□□□□□ -2.26
SS18-214ENST00000580003 ERMAPQ96PL5 475 aaPredicted RBP0.91□□□□□ -2.26
SS18-214ENST00000580003 YIPF3Q9GZM5 350 aa0.91□□□□□ -2.26
SS18-214ENST00000580003 CXorf21Q9HAI6 301 aa0.91□□□□□ -2.26
SS18-214ENST00000580003 HPGDSO60760 199 aa0.9□□□□□ -2.27
SS18-214ENST00000580003 SULT1A3P0DMM9 295 aa0.9□□□□□ -2.27
SS18-214ENST00000580003 SULT1A4P0DMN0 295 aa0.9□□□□□ -2.27
SS18-214ENST00000580003 C5orf46Q6UWT4 87 aa0.9□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms