RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ZNF19P17023 458 aa11.28□□□□□ -0.6
VPS53-218ENST00000575207 EMP1P54849 157 aa11.28□□□□□ -0.6
VPS53-218ENST00000575207 PPP3R1P63098 170 aa11.28□□□□□ -0.6
VPS53-218ENST00000575207 OR5AK2Q8NH90 309 aa11.28□□□□□ -0.6
VPS53-218ENST00000575207 DNAJC9Q8WXX5 260 aa11.28□□□□□ -0.6
VPS53-218ENST00000575207 PDCD1LG2Q9BQ51 273 aa11.28□□□□□ -0.6
VPS53-218ENST00000575207 THTPAQ9BU02 230 aa11.28□□□□□ -0.6
VPS53-218ENST00000575207 TMEM70Q9BUB7 260 aa11.28□□□□□ -0.6
VPS53-218ENST00000575207 C15orf62A8K5M9 175 aa11.27□□□□□ -0.61
VPS53-218ENST00000575207 CRYZL1O95825 349 aa11.27□□□□□ -0.61
VPS53-218ENST00000575207 IL6RP08887 468 aaPredicted RBP11.27□□□□□ -0.61
VPS53-218ENST00000575207 MGMTP16455 207 aa11.27□□□□□ -0.61
VPS53-218ENST00000575207 GCSHP23434 173 aa11.27□□□□□ -0.61
VPS53-218ENST00000575207 BDKRB2P30411 391 aa11.27□□□□□ -0.61
VPS53-218ENST00000575207 USF2Q15853 346 aaPredicted RBP11.27□□□□□ -0.61
VPS53-218ENST00000575207 SETD6Q8TBK2 473 aa11.27□□□□□ -0.61
VPS53-218ENST00000575207 C4orf36Q96KX1 117 aa11.27□□□□□ -0.61
VPS53-218ENST00000575207 Q96M66 194 aa11.27□□□□□ -0.61
VPS53-218ENST00000575207 NEU1Q99519 415 aa11.27□□□□□ -0.61
VPS53-218ENST00000575207 ZNF184Q99676 751 aaPredicted RBP11.27□□□□□ -0.61
VPS53-218ENST00000575207 MUC2Q02817 5179 aa11.26□□□□□ -0.61
VPS53-218ENST00000575207 IGHV7-4-1A0A0J9YVY3 117 aa11.26□□□□□ -0.61
VPS53-218ENST00000575207 DAPL1A0PJW8 107 aa11.26□□□□□ -0.61
VPS53-218ENST00000575207 OR2T8A6NH00 312 aa11.26□□□□□ -0.61
VPS53-218ENST00000575207 CD2P06729 351 aa11.26□□□□□ -0.61
VPS53-218ENST00000575207 RAP2AP10114 183 aa11.26□□□□□ -0.61
VPS53-218ENST00000575207 TPBGQ13641 420 aa11.26□□□□□ -0.61
VPS53-218ENST00000575207 C12orf73Q69YU5 71 aa11.26□□□□□ -0.61
VPS53-218ENST00000575207 ZNF880Q6PDB4 577 aa11.26□□□□□ -0.61
VPS53-218ENST00000575207 GLIPR1L1Q6UWM5 242 aa11.26□□□□□ -0.61
VPS53-218ENST00000575207 TMEM116Q8NCL8 245 aa11.26□□□□□ -0.61
VPS53-218ENST00000575207 OSR1Q8TAX0 266 aaPredicted RBP11.26□□□□□ -0.61
VPS53-218ENST00000575207 RIBC2Q9H4K1 309 aa11.26□□□□□ -0.61
VPS53-218ENST00000575207 E7EUB6 86 aa11.25□□□□□ -0.61
VPS53-218ENST00000575207 P0C879 139 aa11.25□□□□□ -0.61
VPS53-218ENST00000575207 ZNF735P0CB33 412 aa11.25□□□□□ -0.61
VPS53-218ENST00000575207 PTBP1P26599 531 aaKnown RBP eCLIP11.25□□□□□ -0.614e-7■■■■■ 29.2
VPS53-218ENST00000575207 RPL27AP46776 148 aaKnown RBP11.25□□□□□ -0.61
VPS53-218ENST00000575207 ERVFC1-1P60608 527 aa11.25□□□□□ -0.61
VPS53-218ENST00000575207 PLA2G7Q13093 441 aa11.25□□□□□ -0.61
VPS53-218ENST00000575207 TMED1Q13445 227 aa11.25□□□□□ -0.61
VPS53-218ENST00000575207 FAM222AQ5U5X8 452 aa11.25□□□□□ -0.61
VPS53-218ENST00000575207 MOB1BQ7L9L4 216 aa11.25□□□□□ -0.61
VPS53-218ENST00000575207 BSCL2Q96G97 398 aaPredicted RBP11.25□□□□□ -0.61
VPS53-218ENST00000575207 CHMP1AQ9HD42 196 aaPredicted RBP11.25□□□□□ -0.61
VPS53-218ENST00000575207 SDHAF2Q9NX18 166 aa11.25□□□□□ -0.61
VPS53-218ENST00000575207 IGHV3-49A0A0A0MS15 119 aa11.24□□□□□ -0.61
VPS53-218ENST00000575207 CRTAPO75718 401 aaPredicted RBP11.24□□□□□ -0.61
VPS53-218ENST00000575207 NAPSAO96009 420 aa11.24□□□□□ -0.61
VPS53-218ENST00000575207 SPSB3Q6PJ21 355 aa11.24□□□□□ -0.61
VPS53-218ENST00000575207 FAM24BQ8N5W8 94 aa11.24□□□□□ -0.61
VPS53-218ENST00000575207 MUL1Q969V5 352 aa11.24□□□□□ -0.61
VPS53-218ENST00000575207 TRAV2A0A0B4J234 112 aa11.23□□□□□ -0.61
VPS53-218ENST00000575207 ZAR1LA6NP61 321 aa11.23□□□□□ -0.61
VPS53-218ENST00000575207 DNASE2O00115 360 aaPredicted RBP11.23□□□□□ -0.61
VPS53-218ENST00000575207 PSMD7P51665 324 aa11.23□□□□□ -0.61
VPS53-218ENST00000575207 TCF24Q7RTU0 167 aa11.23□□□□□ -0.61
VPS53-218ENST00000575207 RFKQ969G6 155 aa11.23□□□□□ -0.61
VPS53-218ENST00000575207 NEDD4LQ96PU5 975 aa11.23□□□□□ -0.61
VPS53-218ENST00000575207 FAAP24Q9BTP7 215 aa11.23□□□□□ -0.61
VPS53-218ENST00000575207 OR2D2Q9H210 308 aa11.23□□□□□ -0.61
VPS53-218ENST00000575207 MS4A6AQ9H2W1 248 aa11.23□□□□□ -0.61
VPS53-218ENST00000575207 RDH8Q9NYR8 311 aa11.23□□□□□ -0.61
VPS53-218ENST00000575207 CD5P06127 495 aa11.22□□□□□ -0.61
VPS53-218ENST00000575207 AWAT2Q6E213 333 aa11.22□□□□□ -0.61
VPS53-218ENST00000575207 GSG1LQ6UXU4 331 aa11.22□□□□□ -0.61
VPS53-218ENST00000575207 ZNF705AQ6ZN79 300 aaPredicted RBP11.22□□□□□ -0.61
VPS53-218ENST00000575207 SSX7Q7RTT5 188 aa11.22□□□□□ -0.61
VPS53-218ENST00000575207 MFSD4AQ8N468 514 aa11.22□□□□□ -0.61
VPS53-218ENST00000575207 FNDC4Q9H6D8 234 aaPredicted RBP11.22□□□□□ -0.61
VPS53-218ENST00000575207 PUS1Q9Y606 427 aaKnown RBP eCLIP11.22□□□□□ -0.61
VPS53-218ENST00000575207 SMIM9A6NGZ8 99 aa11.21□□□□□ -0.61
VPS53-218ENST00000575207 KNCNA6PVL3 124 aa11.21□□□□□ -0.61
VPS53-218ENST00000575207 PRDX6P30041 224 aa11.21□□□□□ -0.61
VPS53-218ENST00000575207 LINC00315P59091 139 aa11.21□□□□□ -0.61
VPS53-218ENST00000575207 HLA-DRB3P79483 266 aa11.21□□□□□ -0.61
VPS53-218ENST00000575207 ATP6AP1Q15904 470 aa11.21□□□□□ -0.61
VPS53-218ENST00000575207 DHFR2Q86XF0 187 aa11.21□□□□□ -0.61
VPS53-218ENST00000575207 VN1R17PQ8TDU5 208 aa11.21□□□□□ -0.61
VPS53-218ENST00000575207 GPR148Q8TDV2 347 aa11.21□□□□□ -0.61
VPS53-218ENST00000575207 ZNF414Q96IQ9 312 aa11.21□□□□□ -0.61
VPS53-218ENST00000575207 C1QTNF4Q9BXJ3 329 aa11.21□□□□□ -0.61
VPS53-218ENST00000575207 OR51E2Q9H255 320 aa11.21□□□□□ -0.61
VPS53-218ENST00000575207 THYN1Q9P016 225 aa11.21□□□□□ -0.61
VPS53-218ENST00000575207 IGHV3OR16-13A0A075B7E8 117 aa11.2□□□□□ -0.62
VPS53-218ENST00000575207 IGHV3-74A0A0B4J1X5 117 aa11.2□□□□□ -0.62
VPS53-218ENST00000575207 ZNF705FA8MVS1 300 aaPredicted RBP11.2□□□□□ -0.62
VPS53-218ENST00000575207 J3QRE1 110 aa11.2□□□□□ -0.62
VPS53-218ENST00000575207 ZNF705DP0CH99 300 aaPredicted RBP11.2□□□□□ -0.62
VPS53-218ENST00000575207 ZNF705BP0CI00 300 aaPredicted RBP11.2□□□□□ -0.62
VPS53-218ENST00000575207 GNB3P16520 340 aa11.2□□□□□ -0.62
VPS53-218ENST00000575207 MAS1LP35410 378 aa11.2□□□□□ -0.62
VPS53-218ENST00000575207 RNASE12Q5GAN4 147 aaKnown RBP11.2□□□□□ -0.62
VPS53-218ENST00000575207 UBE2UQ5VVX9 321 aa11.2□□□□□ -0.62
VPS53-218ENST00000575207 C6orf201Q7Z4U5 140 aa11.2□□□□□ -0.62
VPS53-218ENST00000575207 LINC00528Q8N1L1 170 aa11.2□□□□□ -0.62
VPS53-218ENST00000575207 C5orf30Q96GV9 206 aa11.2□□□□□ -0.62
VPS53-218ENST00000575207 RPS10-NUDT3A0A1W2PQS6 291 aa11.19□□□□□ -0.62
VPS53-218ENST00000575207 E9PI62 339 aa11.19□□□□□ -0.62
VPS53-218ENST00000575207 NUDT3O95989 172 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms