RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 IL22RA2Q969J5 263 aa14.37□□□□□ -0.11
CCDC40-213ENST00000574933 HSPB9Q9BQS6 159 aa14.37□□□□□ -0.11
CCDC40-213ENST00000574933 BEX1Q9HBH7 125 aa14.37□□□□□ -0.11
CCDC40-213ENST00000574933 NUBP2Q9Y5Y2 271 aa14.37□□□□□ -0.11
CCDC40-213ENST00000574933 STAB1Q9NY15 2570 aa14.36□□□□□ -0.11
CCDC40-213ENST00000574933 CREBL2O60519 120 aaPredicted RBP14.36□□□□□ -0.11
CCDC40-213ENST00000574933 ATG12O94817 140 aa14.36□□□□□ -0.11
CCDC40-213ENST00000574933 SFT2D2O95562 160 aa14.36□□□□□ -0.11
CCDC40-213ENST00000574933 P0C879 139 aa14.36□□□□□ -0.11
CCDC40-213ENST00000574933 ANXA3P12429 323 aa14.36□□□□□ -0.11
CCDC40-213ENST00000574933 ERVK-16P61578 105 aa14.36□□□□□ -0.11
CCDC40-213ENST00000574933 CX3CL1P78423 397 aa14.36□□□□□ -0.11
CCDC40-213ENST00000574933 PPP1R1AQ13522 171 aa14.36□□□□□ -0.11
CCDC40-213ENST00000574933 DCTN2Q13561 401 aaKnown RBP14.36□□□□□ -0.11
CCDC40-213ENST00000574933 SLC35E3Q7Z769 313 aa14.36□□□□□ -0.11
CCDC40-213ENST00000574933 MMD2Q8IY49 270 aa14.36□□□□□ -0.11
CCDC40-213ENST00000574933 LHFPL5Q8TAF8 219 aa14.36□□□□□ -0.11
CCDC40-213ENST00000574933 WNT10AQ9GZT5 417 aa14.36□□□□□ -0.11
CCDC40-213ENST00000574933 OR51J1Q9H342 316 aa14.36□□□□□ -0.11
CCDC40-213ENST00000574933 ZNF430Q9H8G1 570 aaPredicted RBP14.36□□□□□ -0.11
CCDC40-213ENST00000574933 TMEM140Q9NV12 185 aa14.36□□□□□ -0.11
CCDC40-213ENST00000574933 NUDT15Q9NV35 164 aa14.36□□□□□ -0.11
CCDC40-213ENST00000574933 UPK2O00526 184 aa14.35□□□□□ -0.11
CCDC40-213ENST00000574933 CA2P00918 260 aa14.35□□□□□ -0.11
CCDC40-213ENST00000574933 KRASP01116 189 aa14.35□□□□□ -0.11
CCDC40-213ENST00000574933 IGF1P05019 195 aa14.35□□□□□ -0.11
CCDC40-213ENST00000574933 H2AFB2P0C5Z0 115 aa14.35□□□□□ -0.11
CCDC40-213ENST00000574933 OR4E1P0C645 316 aa14.35□□□□□ -0.11
CCDC40-213ENST00000574933 MAS1LP35410 378 aa14.35□□□□□ -0.11
CCDC40-213ENST00000574933 G6PCP35575 357 aa14.35□□□□□ -0.11
CCDC40-213ENST00000574933 PROK1P58294 105 aa14.35□□□□□ -0.11
CCDC40-213ENST00000574933 SRPXP78539 464 aa14.35□□□□□ -0.11
CCDC40-213ENST00000574933 PJVKQ0ZLH3 352 aa14.35□□□□□ -0.11
CCDC40-213ENST00000574933 TRIM16LQ309B1 348 aa14.35□□□□□ -0.11
CCDC40-213ENST00000574933 C9orf152Q5JTZ5 239 aa14.35□□□□□ -0.11
CCDC40-213ENST00000574933 SSX9Q7RTT3 188 aa14.35□□□□□ -0.11
CCDC40-213ENST00000574933 SELENOHQ8IZQ5 122 aaKnown RBP14.35□□□□□ -0.11
CCDC40-213ENST00000574933 LRTM2Q8N967 370 aa14.35□□□□□ -0.11
CCDC40-213ENST00000574933 DMBX1Q8NFW5 382 aa14.35□□□□□ -0.11
CCDC40-213ENST00000574933 RBPMSQ93062 196 aaKnown RBP14.35□□□□□ -0.11
CCDC40-213ENST00000574933 PIGBOS1A0A0B4J2F0 54 aa14.34□□□□□ -0.11
CCDC40-213ENST00000574933 LINC01548A6NM66 108 aa14.34□□□□□ -0.11
CCDC40-213ENST00000574933 AP4M1O00189 453 aa14.34□□□□□ -0.11
CCDC40-213ENST00000574933 IGKV1-5P01602 117 aa14.34□□□□□ -0.11
CCDC40-213ENST00000574933 ANXA7P20073 488 aaKnown RBP14.34□□□□□ -0.11
CCDC40-213ENST00000574933 MDKP21741 143 aaPredicted RBP14.34□□□□□ -0.11
CCDC40-213ENST00000574933 VDAC2P45880 294 aaPredicted RBP14.34□□□□□ -0.11
CCDC40-213ENST00000574933 NDPQ00604 133 aa14.34□□□□□ -0.11
CCDC40-213ENST00000574933 WIPF2Q8TF74 440 aaPredicted RBP14.34□□□□□ -0.11
CCDC40-213ENST00000574933 TENM1Q9UKZ4 2725 aa14.34□□□□□ -0.11
CCDC40-213ENST00000574933 TRAV6A0A075B6T7 132 aa14.33□□□□□ -0.12
CCDC40-213ENST00000574933 C9orf170A2RU37 121 aa14.33□□□□□ -0.12
CCDC40-213ENST00000574933 PTTG1O95997 202 aa14.33□□□□□ -0.12
CCDC40-213ENST00000574933 EGR2P11161 476 aaPredicted RBP14.33□□□□□ -0.12
CCDC40-213ENST00000574933 VAMP1P23763 118 aa14.33□□□□□ -0.12
CCDC40-213ENST00000574933 RPL8P62917 257 aaKnown RBP14.33□□□□□ -0.12
CCDC40-213ENST00000574933 DHRS2Q13268 280 aa14.33□□□□□ -0.12
CCDC40-213ENST00000574933 TMEM95Q3KNT9 176 aa14.33□□□□□ -0.12
CCDC40-213ENST00000574933 AWAT1Q58HT5 328 aa14.33□□□□□ -0.12
CCDC40-213ENST00000574933 LYG2Q86SG7 212 aa14.33□□□□□ -0.12
CCDC40-213ENST00000574933 FAM219AQ8IW50 185 aa14.33□□□□□ -0.12
CCDC40-213ENST00000574933 FOXRED2Q8IWF2 684 aa14.33□□□□□ -0.12
CCDC40-213ENST00000574933 LGI3Q8N145 548 aa14.33□□□□□ -0.12
CCDC40-213ENST00000574933 CLCC1Q96S66 551 aa14.33□□□□□ -0.12
CCDC40-213ENST00000574933 MARVELD1Q9BSK0 173 aa14.33□□□□□ -0.12
CCDC40-213ENST00000574933 RNF114Q9Y508 228 aa14.33□□□□□ -0.12
CCDC40-213ENST00000574933 A0A0B4J2A0 478 aa14.32□□□□□ -0.12
CCDC40-213ENST00000574933 DUXBA0A1W2PPF3 345 aa14.32□□□□□ -0.12
CCDC40-213ENST00000574933 DUS4LO95620 317 aaKnown RBP14.32□□□□□ -0.12
CCDC40-213ENST00000574933 FXYD3Q14802 87 aa14.32□□□□□ -0.12
CCDC40-213ENST00000574933 ANKRD55Q3KP44 614 aa14.32□□□□□ -0.12
CCDC40-213ENST00000574933 C19orf54Q5BKX5 351 aa14.32□□□□□ -0.12
CCDC40-213ENST00000574933 PLET1Q6UQ28 207 aa14.32□□□□□ -0.12
CCDC40-213ENST00000574933 H2BFWTQ7Z2G1 175 aa14.32□□□□□ -0.12
CCDC40-213ENST00000574933 ZNF695Q8IW36 515 aa14.32□□□□□ -0.12
CCDC40-213ENST00000574933 STPG2Q8N412 459 aa14.32□□□□□ -0.12
CCDC40-213ENST00000574933 SGMS2Q8NHU3 365 aa14.32□□□□□ -0.12
CCDC40-213ENST00000574933 CHPT1Q8WUD6 406 aa14.32□□□□□ -0.12
CCDC40-213ENST00000574933 ARPC1AQ92747 370 aa14.32□□□□□ -0.12
CCDC40-213ENST00000574933 LSM10Q969L4 123 aaKnown RBP14.32□□□□□ -0.12
CCDC40-213ENST00000574933 SHPKQ9UHJ6 478 aa14.32□□□□□ -0.12
CCDC40-213ENST00000574933 FBXO7Q9Y3I1 522 aa14.32□□□□□ -0.12
CCDC40-213ENST00000574933 TRAV3A0A0B4J244 114 aa14.31□□□□□ -0.12
CCDC40-213ENST00000574933 ATP6V0E1O15342 81 aa14.31□□□□□ -0.12
CCDC40-213ENST00000574933 HLA-AP01891 365 aaKnown RBP14.31□□□□□ -0.12
CCDC40-213ENST00000574933 IL5P05113 134 aa14.31□□□□□ -0.12
CCDC40-213ENST00000574933 OR9G9P0C7N8 305 aa14.31□□□□□ -0.12
CCDC40-213ENST00000574933 HLA-GP17693 338 aa14.31□□□□□ -0.12
CCDC40-213ENST00000574933 ARSJQ5FYB0 599 aaPredicted RBP14.31□□□□□ -0.12
CCDC40-213ENST00000574933 TMEM268Q5VZI3 342 aa14.31□□□□□ -0.12
CCDC40-213ENST00000574933 ACTL6BO94805 426 aa14.3□□□□□ -0.12
CCDC40-213ENST00000574933 CNIH1O95406 144 aa14.3□□□□□ -0.12
CCDC40-213ENST00000574933 VDAC1P21796 283 aa14.3□□□□□ -0.12
CCDC40-213ENST00000574933 AKR1C2P52895 323 aa14.3□□□□□ -0.12
CCDC40-213ENST00000574933 CFHR3Q02985 330 aa14.3□□□□□ -0.12
CCDC40-213ENST00000574933 TNXAQ16473 311 aa14.3□□□□□ -0.12
CCDC40-213ENST00000574933 AARDQ4LEZ3 155 aa14.3□□□□□ -0.12
CCDC40-213ENST00000574933 C4orf46Q504U0 113 aa14.3□□□□□ -0.12
CCDC40-213ENST00000574933 AKIRIN2Q53H80 203 aa14.3□□□□□ -0.12
CCDC40-213ENST00000574933 SLC35G3Q8N808 338 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms