RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 C8orf88P0DMB2 117 aa13.11□□□□□ -0.31
CLK3-221ENST00000568139 MAS1LP35410 378 aa13.11□□□□□ -0.31
CLK3-221ENST00000568139 RPL27AP46776 148 aaKnown RBP13.11□□□□□ -0.31
CLK3-221ENST00000568139 RPL30P62888 115 aaKnown RBP13.11□□□□□ -0.31
CLK3-221ENST00000568139 FABP5Q01469 135 aa13.11□□□□□ -0.31
CLK3-221ENST00000568139 ARFRP1Q13795 201 aa13.11□□□□□ -0.31
CLK3-221ENST00000568139 KCTD9Q7L273 389 aa13.11□□□□□ -0.31
CLK3-221ENST00000568139 VKORC1L1Q8N0U8 176 aa13.11□□□□□ -0.31
CLK3-221ENST00000568139 PUSL1Q8N0Z8 303 aaKnown RBP13.11□□□□□ -0.31
CLK3-221ENST00000568139 VSTM2AQ8TAG5 236 aa13.11□□□□□ -0.31
CLK3-221ENST00000568139 TMEM167AQ8TBQ9 72 aa13.11□□□□□ -0.31
CLK3-221ENST00000568139 EEF1AKMT3Q96AZ1 226 aa13.11□□□□□ -0.31
CLK3-221ENST00000568139 OR2A7Q96R45 310 aa13.11□□□□□ -0.31
CLK3-221ENST00000568139 SCN3BQ9NY72 215 aa13.11□□□□□ -0.31
CLK3-221ENST00000568139 MRPS7Q9Y2R9 242 aaKnown RBP13.11□□□□□ -0.31
CLK3-221ENST00000568139 RBMX2Q9Y388 322 aaKnown RBP13.11□□□□□ -0.31
CLK3-221ENST00000568139 S4R3C0 116 aa13.11□□□□□ -0.31
CLK3-221ENST00000568139 A0A075B6Q4 140 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 DPPA5A6NC42 116 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 J3QRK9 145 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 IGLV2-14P01704 120 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 HLA-DQB1P01920 261 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 HSMCR30P0CW71 290 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 CTRB1P17538 263 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 ATF4P18848 351 aaPredicted RBP13.1□□□□□ -0.31
CLK3-221ENST00000568139 RAB6AP20340 208 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 PSMB6P28072 239 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 BMI1P35226 326 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 TALDO1P37837 337 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 RCN1Q15293 331 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 CTRB2Q6GPI1 263 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 BTNL8Q6UX41 500 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 Q6ZWC4 215 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 LYG2Q86SG7 212 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 OR2W1Q9Y3N9 320 aa13.1□□□□□ -0.31
CLK3-221ENST00000568139 CASQ2O14958 399 aaPredicted RBP13.09□□□□□ -0.31
CLK3-221ENST00000568139 SPRY2O43597 315 aa13.09□□□□□ -0.31
CLK3-221ENST00000568139 SLC22A5O76082 557 aa13.09□□□□□ -0.31
CLK3-221ENST00000568139 DHFRP00374 187 aa13.09□□□□□ -0.31
CLK3-221ENST00000568139 AREGP15514 252 aa13.09□□□□□ -0.31
CLK3-221ENST00000568139 HIST1H1BP16401 226 aaKnown RBP13.09□□□□□ -0.31
CLK3-221ENST00000568139 CD36P16671 472 aa13.09□□□□□ -0.31
CLK3-221ENST00000568139 DTYMKP23919 212 aa13.09□□□□□ -0.31
CLK3-221ENST00000568139 MLLT11Q13015 90 aaPredicted RBP13.09□□□□□ -0.31
CLK3-221ENST00000568139 SSX1Q16384 188 aa13.09□□□□□ -0.31
CLK3-221ENST00000568139 OR2B11Q5JQS5 317 aa13.09□□□□□ -0.31
CLK3-221ENST00000568139 MARC2Q969Z3 335 aa13.09□□□□□ -0.31
CLK3-221ENST00000568139 KLK5Q9Y337 293 aaPredicted RBP13.09□□□□□ -0.31
CLK3-221ENST00000568139 TRBV7-1A0A0A6YYK4 115 aa13.08□□□□□ -0.32
CLK3-221ENST00000568139 CLEC3BP05452 202 aa13.08□□□□□ -0.32
CLK3-221ENST00000568139 GALP22466 123 aa13.08□□□□□ -0.32
CLK3-221ENST00000568139 APOC4P55056 127 aa13.08□□□□□ -0.32
CLK3-221ENST00000568139 BRWD1-AS2P59051 145 aa13.08□□□□□ -0.32
CLK3-221ENST00000568139 EIF4EBP1Q13541 118 aaPredicted RBP13.08□□□□□ -0.32
CLK3-221ENST00000568139 UNQ9165/PRO28630Q6UXU0 137 aa13.08□□□□□ -0.32
CLK3-221ENST00000568139 RPP25LQ8N5L8 163 aaKnown RBP13.08□□□□□ -0.32
CLK3-221ENST00000568139 OR1L6Q8NGR2 347 aa13.08□□□□□ -0.32
CLK3-221ENST00000568139 OR4S2Q8NH73 311 aa13.08□□□□□ -0.32
CLK3-221ENST00000568139 DUSP21Q9H596 190 aa13.08□□□□□ -0.32
CLK3-221ENST00000568139 ACOT13Q9NPJ3 140 aa13.08□□□□□ -0.32
CLK3-221ENST00000568139 MRPL27Q9P0M9 148 aaKnown RBP13.08□□□□□ -0.32
CLK3-221ENST00000568139 ELF5Q9UKW6 265 aaPredicted RBP13.08□□□□□ -0.32
CLK3-221ENST00000568139 IGLV11-55A0A075B6I3 123 aa13.07□□□□□ -0.32
CLK3-221ENST00000568139 IGKV1D-13A0A0B4J2D9 117 aa13.07□□□□□ -0.32
CLK3-221ENST00000568139 METTL21EPA6NDL7 271 aa13.07□□□□□ -0.32
CLK3-221ENST00000568139 UBE2CO00762 179 aa13.07□□□□□ -0.32
CLK3-221ENST00000568139 CTXN2P0C2S0 81 aa13.07□□□□□ -0.32
CLK3-221ENST00000568139 IGKV1-13P0DP09 117 aa13.07□□□□□ -0.32
CLK3-221ENST00000568139 NFYAP23511 347 aaPredicted RBP13.07□□□□□ -0.32
CLK3-221ENST00000568139 OR10A3P58181 314 aa13.07□□□□□ -0.32
CLK3-221ENST00000568139 ZNF585BQ52M93 769 aa13.07□□□□□ -0.32
CLK3-221ENST00000568139 RBPMS2Q6ZRY4 209 aaKnown RBP13.07□□□□□ -0.32
CLK3-221ENST00000568139 OR2C3Q8N628 320 aa13.07□□□□□ -0.32
CLK3-221ENST00000568139 CXorf58Q96LI9 332 aa13.07□□□□□ -0.32
CLK3-221ENST00000568139 HSD17B10Q99714 261 aaKnown RBP13.07□□□□□ -0.32
CLK3-221ENST00000568139 TPRKBQ9Y3C4 175 aa13.07□□□□□ -0.32
CLK3-221ENST00000568139 TRAV1-2A0A0B4J238 106 aa13.06□□□□□ -0.32
CLK3-221ENST00000568139 MFSD2BA6NFX1 497 aa13.06□□□□□ -0.32
CLK3-221ENST00000568139 CGB1A6NKQ9 187 aa13.06□□□□□ -0.32
CLK3-221ENST00000568139 IFITM5A6NNB3 132 aa13.06□□□□□ -0.32
CLK3-221ENST00000568139 EBAG9O00559 213 aa13.06□□□□□ -0.32
CLK3-221ENST00000568139 PDCD5O14737 125 aa13.06□□□□□ -0.32
CLK3-221ENST00000568139 ELLP55199 621 aaPredicted RBP13.06□□□□□ -0.32
CLK3-221ENST00000568139 ARL6IP1Q15041 203 aa13.06□□□□□ -0.32
CLK3-221ENST00000568139 DEFB135Q30KP9 77 aa13.06□□□□□ -0.32
CLK3-221ENST00000568139 SLC38A6Q8IZM9 456 aa13.06□□□□□ -0.32
CLK3-221ENST00000568139 MFSD4AQ8N468 514 aa13.06□□□□□ -0.32
CLK3-221ENST00000568139 MGLLQ99685 303 aa13.06□□□□□ -0.32
CLK3-221ENST00000568139 C5orf66Q9H5L9 145 aa13.06□□□□□ -0.32
CLK3-221ENST00000568139 KIR2DL5BA0A0G2JN68 375 aa13.05□□□□□ -0.32
CLK3-221ENST00000568139 KIR2DL5BA0A0G2JPC4 375 aa13.05□□□□□ -0.32
CLK3-221ENST00000568139 DEFA4P12838 97 aa13.05□□□□□ -0.32
CLK3-221ENST00000568139 RPL8P62917 257 aaKnown RBP13.05□□□□□ -0.32
CLK3-221ENST00000568139 KIR2DL5AQ8N109 375 aa13.05□□□□□ -0.32
CLK3-221ENST00000568139 KIR2DL5BQ8NHK3 375 aa13.05□□□□□ -0.32
CLK3-221ENST00000568139 ZNF502Q8TBZ5 544 aa13.05□□□□□ -0.32
CLK3-221ENST00000568139 TCTEX1D2Q8WW35 142 aa13.05□□□□□ -0.32
CLK3-221ENST00000568139 RNF183Q96D59 192 aa13.05□□□□□ -0.32
CLK3-221ENST00000568139 SPAG8Q99932 426 aaPredicted RBP13.05□□□□□ -0.32
CLK3-221ENST00000568139 DCSTAMPQ9H295 470 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms