RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 OR2A7Q96R45 310 aa15.3■□□□□ 0.04
CLN3-225ENST00000566824 PLEKHA2Q9HB19 425 aa15.3■□□□□ 0.04
CLN3-225ENST00000566824 TCRBV4S1A1TA0A5B7 111 aa15.29■□□□□ 0.04
CLN3-225ENST00000566824 CNIH1O95406 144 aa15.29■□□□□ 0.04
CLN3-225ENST00000566824 HRASP01112 189 aa15.29■□□□□ 0.04
CLN3-225ENST00000566824 RPLP1P05386 114 aaKnown RBP15.29■□□□□ 0.04
CLN3-225ENST00000566824 IL6RP08887 468 aaPredicted RBP15.29■□□□□ 0.04
CLN3-225ENST00000566824 APELAP0DMC3 54 aa15.29■□□□□ 0.04
CLN3-225ENST00000566824 TAS2R31P59538 309 aa15.29■□□□□ 0.04
CLN3-225ENST00000566824 POU2AF1Q16633 256 aa15.29■□□□□ 0.04
CLN3-225ENST00000566824 SP6Q3SY56 376 aa15.29■□□□□ 0.04
CLN3-225ENST00000566824 POC5Q8NA72 575 aa15.29■□□□□ 0.04
CLN3-225ENST00000566824 SGMS2Q8NHU3 365 aa15.29■□□□□ 0.04
CLN3-225ENST00000566824 KLK15Q9H2R5 256 aa15.29■□□□□ 0.04
CLN3-225ENST00000566824 A0A1B0GW64 132 aa15.28■□□□□ 0.04
CLN3-225ENST00000566824 E7EUB6 86 aa15.28■□□□□ 0.04
CLN3-225ENST00000566824 IGHG4P01861 327 aa15.28■□□□□ 0.04
CLN3-225ENST00000566824 NQO2P16083 231 aa15.28■□□□□ 0.04
CLN3-225ENST00000566824 G6PCP35575 357 aa15.28■□□□□ 0.04
CLN3-225ENST00000566824 AP3S2P59780 193 aa15.28■□□□□ 0.04
CLN3-225ENST00000566824 SLC35B1P78383 322 aa15.28■□□□□ 0.04
CLN3-225ENST00000566824 TRIQKQ629K1 86 aa15.28■□□□□ 0.04
CLN3-225ENST00000566824 OR4X2Q8NGF9 303 aa15.28■□□□□ 0.04
CLN3-225ENST00000566824 CD300LFQ8TDQ1 290 aa15.28■□□□□ 0.04
CLN3-225ENST00000566824 TMEM230Q96A57 120 aa15.28■□□□□ 0.04
CLN3-225ENST00000566824 TMEM140Q9NV12 185 aa15.28■□□□□ 0.04
CLN3-225ENST00000566824 COMMD9Q9P000 198 aa15.28■□□□□ 0.04
CLN3-225ENST00000566824 SCP2D1Q9UJQ7 156 aa15.28■□□□□ 0.04
CLN3-225ENST00000566824 MGAM2Q2M2H8 2515 aa15.27■□□□□ 0.04
CLN3-225ENST00000566824 MSGN1A6NI15 193 aa15.27■□□□□ 0.04
CLN3-225ENST00000566824 KRASP01116 189 aa15.27■□□□□ 0.04
CLN3-225ENST00000566824 IGLV1-40P01703 118 aa15.27■□□□□ 0.04
CLN3-225ENST00000566824 SURF2Q15527 256 aaPredicted RBP15.27■□□□□ 0.04
CLN3-225ENST00000566824 UNQ5815/PRO19632Q6UWF5 114 aa15.27■□□□□ 0.04
CLN3-225ENST00000566824 MMD2Q8IY49 270 aa15.27■□□□□ 0.04
CLN3-225ENST00000566824 TCTEX1D1Q8N7M0 179 aa15.27■□□□□ 0.04
CLN3-225ENST00000566824 COPZ2Q9P299 210 aa15.27■□□□□ 0.04
CLN3-225ENST00000566824 NBEAL1Q6ZS30 2694 aa15.27■□□□□ 0.03
CLN3-225ENST00000566824 C3orf85A0A1B0GTC6 90 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 A0A1W2PN81 502 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 CGB1A6NKQ9 187 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 MARCH11A6NNE9 402 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 H0Y980 276 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 UPK2O00526 184 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 OPN1MWP04001 364 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 OPN1MW2P0DN77 364 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 OPN1MW3P0DN78 364 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 PSMB8P28062 276 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 S100GP29377 79 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 FAUP35544 74 aaKnown RBP15.26■□□□□ 0.03
CLN3-225ENST00000566824 CHRNA7P36544 502 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 CCR6P51684 374 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 FOXE3Q13461 319 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 KIAA0141Q14154 515 aaPredicted RBP15.26■□□□□ 0.03
CLN3-225ENST00000566824 KHDC1LQ5JSQ8 128 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 TEX38Q6PEX7 206 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 LINC00299Q6ZSB3 139 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 NDUFA11Q86Y39 141 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 SRSF12Q8WXF0 261 aaKnown RBP15.26■□□□□ 0.03
CLN3-225ENST00000566824 BET1LQ9NYM9 111 aa15.26■□□□□ 0.03
CLN3-225ENST00000566824 C14orf166Q9Y224 244 aaKnown RBP15.26■□□□□ 0.03
CLN3-225ENST00000566824 PLA2G10O15496 165 aa15.25■□□□□ 0.03
CLN3-225ENST00000566824 OR9G9P0C7N8 305 aa15.25■□□□□ 0.03
CLN3-225ENST00000566824 BTCP35070 178 aa15.25■□□□□ 0.03
CLN3-225ENST00000566824 ECI1P42126 302 aa15.25■□□□□ 0.03
CLN3-225ENST00000566824 IZUMO4Q1ZYL8 232 aa15.25■□□□□ 0.03
CLN3-225ENST00000566824 AKIRIN2Q53H80 203 aa15.25■□□□□ 0.03
CLN3-225ENST00000566824 RNF152Q8N8N0 203 aa15.25■□□□□ 0.03
CLN3-225ENST00000566824 CCDC71LQ8N9Z2 235 aa15.25■□□□□ 0.03
CLN3-225ENST00000566824 DMBX1Q8NFW5 382 aa15.25■□□□□ 0.03
CLN3-225ENST00000566824 OR5T1Q8NG75 326 aa15.25■□□□□ 0.03
CLN3-225ENST00000566824 VSTM2AQ8TAG5 236 aa15.25■□□□□ 0.03
CLN3-225ENST00000566824 SEC22AQ96IW7 307 aa15.25■□□□□ 0.03
CLN3-225ENST00000566824 GON7Q9BXV9 100 aa15.25■□□□□ 0.03
CLN3-225ENST00000566824 FAM212BQ9NTI7 297 aaPredicted RBP15.25■□□□□ 0.03
CLN3-225ENST00000566824 PRR13Q9NZ81 148 aa15.25■□□□□ 0.03
CLN3-225ENST00000566824 FOXA2Q9Y261 457 aaPredicted RBP15.25■□□□□ 0.03
CLN3-225ENST00000566824 NSG2Q9Y328 171 aa15.25■□□□□ 0.03
CLN3-225ENST00000566824 TSSC4Q9Y5U2 329 aaPredicted RBP15.25■□□□□ 0.03
CLN3-225ENST00000566824 HMX3A6NHT5 357 aa15.24■□□□□ 0.03
CLN3-225ENST00000566824 CRYM-AS1A6NIL9 109 aa15.24■□□□□ 0.03
CLN3-225ENST00000566824 TEX22C9J3V5 150 aa15.24■□□□□ 0.03
CLN3-225ENST00000566824 M0QZ24 198 aa15.24■□□□□ 0.03
CLN3-225ENST00000566824 IGKV1-5P01602 117 aa15.24■□□□□ 0.03
CLN3-225ENST00000566824 PF4V1P10720 104 aa15.24■□□□□ 0.03
CLN3-225ENST00000566824 INPP1P49441 399 aa15.24■□□□□ 0.03
CLN3-225ENST00000566824 RPL23AP62750 156 aaKnown RBP15.24■□□□□ 0.03
CLN3-225ENST00000566824 PRR31Q5SQ13 230 aa15.24■□□□□ 0.03
CLN3-225ENST00000566824 C19orf35Q6ZS72 473 aa15.24■□□□□ 0.03
CLN3-225ENST00000566824 COMMD1Q8N668 190 aa15.24■□□□□ 0.03
CLN3-225ENST00000566824 LHFPL5Q8TAF8 219 aa15.24■□□□□ 0.03
CLN3-225ENST00000566824 FAM110DQ8TAY7 271 aaPredicted RBP15.24■□□□□ 0.03
CLN3-225ENST00000566824 NAA60Q9H7X0 242 aa15.24■□□□□ 0.03
CLN3-225ENST00000566824 DBX1A6NMT0 343 aa15.23■□□□□ 0.03
CLN3-225ENST00000566824 ELANEP08246 267 aa15.23■□□□□ 0.03
CLN3-225ENST00000566824 OR5AC1P0C628 307 aa15.23■□□□□ 0.03
CLN3-225ENST00000566824 HLA-GP17693 338 aa15.23■□□□□ 0.03
CLN3-225ENST00000566824 RPL8P62917 257 aaKnown RBP15.23■□□□□ 0.03
CLN3-225ENST00000566824 SUPT4H1P63272 117 aaKnown RBP15.23■□□□□ 0.03
CLN3-225ENST00000566824 C2orf68Q2NKX9 166 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms