RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 KIAA1456Q9P272 454 aa13.19□□□□□ -0.3
VPS4A-202ENST00000562754 SIGLEC9Q9Y336 463 aa13.19□□□□□ -0.3
VPS4A-202ENST00000562754 DUXBA0A1W2PPF3 345 aa13.18□□□□□ -0.3
VPS4A-202ENST00000562754 SH2D7A6NKC9 451 aaPredicted RBP13.18□□□□□ -0.3
VPS4A-202ENST00000562754 FGF16O43320 207 aa13.18□□□□□ -0.3
VPS4A-202ENST00000562754 OR2A4O95047 310 aa13.18□□□□□ -0.3
VPS4A-202ENST00000562754 HOXB5P09067 269 aa13.18□□□□□ -0.3
VPS4A-202ENST00000562754 PJVKQ0ZLH3 352 aa13.18□□□□□ -0.3
VPS4A-202ENST00000562754 C2orf68Q2NKX9 166 aa13.18□□□□□ -0.3
VPS4A-202ENST00000562754 GGNBP1Q5YKI7 109 aa13.18□□□□□ -0.3
VPS4A-202ENST00000562754 TEX45Q8NA69 505 aa13.18□□□□□ -0.3
VPS4A-202ENST00000562754 RNASE11Q8TAA1 199 aaKnown RBP13.18□□□□□ -0.3
VPS4A-202ENST00000562754 LSM10Q969L4 123 aaKnown RBP13.18□□□□□ -0.3
VPS4A-202ENST00000562754 GPR146Q96CH1 333 aa13.18□□□□□ -0.3
VPS4A-202ENST00000562754 OR2A7Q96R45 310 aa13.18□□□□□ -0.3
VPS4A-202ENST00000562754 C1RLQ9NZP8 487 aa13.18□□□□□ -0.3
VPS4A-202ENST00000562754 MMP24Q9Y5R2 645 aa13.18□□□□□ -0.3
VPS4A-202ENST00000562754 TET2Q6N021 2002 aaPredicted RBP13.17□□□□□ -0.3
VPS4A-202ENST00000562754 UPK2O00526 184 aa13.17□□□□□ -0.3
VPS4A-202ENST00000562754 CCSO14618 274 aa13.17□□□□□ -0.3
VPS4A-202ENST00000562754 ATG12O94817 140 aa13.17□□□□□ -0.3
VPS4A-202ENST00000562754 VDAC1P21796 283 aa13.17□□□□□ -0.3
VPS4A-202ENST00000562754 UBA52P62987 128 aaKnown RBP13.17□□□□□ -0.3
VPS4A-202ENST00000562754 Q6ZRM9 215 aa13.17□□□□□ -0.3
VPS4A-202ENST00000562754 H2BFWTQ7Z2G1 175 aa13.17□□□□□ -0.3
VPS4A-202ENST00000562754 CADM3Q8N126 398 aa13.17□□□□□ -0.3
VPS4A-202ENST00000562754 UXS1Q8NBZ7 420 aa13.17□□□□□ -0.3
VPS4A-202ENST00000562754 VSTM2AQ8TAG5 236 aa13.17□□□□□ -0.3
VPS4A-202ENST00000562754 AIFM2Q9BRQ8 373 aa13.17□□□□□ -0.3
VPS4A-202ENST00000562754 ZNF430Q9H8G1 570 aaPredicted RBP13.17□□□□□ -0.3
VPS4A-202ENST00000562754 NSG2Q9Y328 171 aa13.17□□□□□ -0.3
VPS4A-202ENST00000562754 ZFHX3Q15911 3703 aa13.16□□□□□ -0.3
VPS4A-202ENST00000562754 MPTX1A8MV57 137 aa13.16□□□□□ -0.3
VPS4A-202ENST00000562754 FCN1O00602 326 aa13.16□□□□□ -0.3
VPS4A-202ENST00000562754 SSNA1O43805 119 aa13.16□□□□□ -0.3
VPS4A-202ENST00000562754 RNASE1P07998 156 aaKnown RBP13.16□□□□□ -0.3
VPS4A-202ENST00000562754 MYOD1P15172 320 aa13.16□□□□□ -0.3
VPS4A-202ENST00000562754 OR2B8PP59922 312 aa13.16□□□□□ -0.3
VPS4A-202ENST00000562754 SSBP2P81877 361 aaPredicted RBP13.16□□□□□ -0.3
VPS4A-202ENST00000562754 RELBQ01201 579 aa13.16□□□□□ -0.3
VPS4A-202ENST00000562754 PLGLAQ15195 96 aa13.16□□□□□ -0.3
VPS4A-202ENST00000562754 PRSS8Q16651 343 aa13.16□□□□□ -0.3
VPS4A-202ENST00000562754 FAM219AQ8IW50 185 aa13.16□□□□□ -0.3
VPS4A-202ENST00000562754 RRNAD1Q96FB5 475 aaKnown RBP13.16□□□□□ -0.3
VPS4A-202ENST00000562754 CLCC1Q96S66 551 aa13.16□□□□□ -0.3
VPS4A-202ENST00000562754 TMED3Q9Y3Q3 217 aa13.16□□□□□ -0.3
VPS4A-202ENST00000562754 M0QZK8 103 aa13.15□□□□□ -0.3
VPS4A-202ENST00000562754 TCF21O43680 179 aa13.15□□□□□ -0.3
VPS4A-202ENST00000562754 CA2P00918 260 aa13.15□□□□□ -0.3
VPS4A-202ENST00000562754 HLA-DRB1P01911 266 aa13.15□□□□□ -0.3
VPS4A-202ENST00000562754 SRSF2Q01130 221 aaKnown RBP13.15□□□□□ -0.3
VPS4A-202ENST00000562754 PPP1R27Q86WC6 154 aa13.15□□□□□ -0.3
VPS4A-202ENST00000562754 OR4A5Q8NH83 315 aa13.15□□□□□ -0.3
VPS4A-202ENST00000562754 JMJD8Q96S16 334 aa13.15□□□□□ -0.3
VPS4A-202ENST00000562754 RASL11BQ9BPW5 248 aa13.15□□□□□ -0.3
VPS4A-202ENST00000562754 HSPB9Q9BQS6 159 aa13.15□□□□□ -0.3
VPS4A-202ENST00000562754 RANBP3Q9H6Z4 567 aaPredicted RBP13.15□□□□□ -0.3
VPS4A-202ENST00000562754 RAB18Q9NP72 206 aa13.15□□□□□ -0.3
VPS4A-202ENST00000562754 CACNG5Q9UF02 275 aa13.15□□□□□ -0.3
VPS4A-202ENST00000562754 PIGBOS1A0A0B4J2F0 54 aa13.14□□□□□ -0.31
VPS4A-202ENST00000562754 C15orf61A6NNL5 157 aa13.14□□□□□ -0.31
VPS4A-202ENST00000562754 RPL8P62917 257 aaKnown RBP13.14□□□□□ -0.31
VPS4A-202ENST00000562754 BLCAPP62952 87 aa13.14□□□□□ -0.31
VPS4A-202ENST00000562754 NDPQ00604 133 aa13.14□□□□□ -0.31
VPS4A-202ENST00000562754 C10orf55Q5SWW7 151 aa13.14□□□□□ -0.31
VPS4A-202ENST00000562754 Q6ZS46 218 aa13.14□□□□□ -0.31
VPS4A-202ENST00000562754 FOXRED2Q8IWF2 684 aa13.14□□□□□ -0.31
VPS4A-202ENST00000562754 MMD2Q8IY49 270 aa13.14□□□□□ -0.31
VPS4A-202ENST00000562754 OR10C1Q96KK4 312 aa13.14□□□□□ -0.31
VPS4A-202ENST00000562754 IGHV7-81A0A0B4J1V7 117 aa13.13□□□□□ -0.31
VPS4A-202ENST00000562754 A0A1B0GVG6 124 aa13.13□□□□□ -0.31
VPS4A-202ENST00000562754 FAM181BA6NEQ2 426 aa13.13□□□□□ -0.31
VPS4A-202ENST00000562754 GOSR2O14653 212 aa13.13□□□□□ -0.31
VPS4A-202ENST00000562754 SIX6O95475 246 aa13.13□□□□□ -0.31
VPS4A-202ENST00000562754 IFNA21P01568 189 aa13.13□□□□□ -0.31
VPS4A-202ENST00000562754 HLA-GP17693 338 aa13.13□□□□□ -0.31
VPS4A-202ENST00000562754 FCN2Q15485 313 aa13.13□□□□□ -0.31
VPS4A-202ENST00000562754 OR5M8Q8NGP6 311 aa13.13□□□□□ -0.31
VPS4A-202ENST00000562754 TAF15Q92804 592 aaKnown RBP eCLIP13.13□□□□□ -0.31
VPS4A-202ENST00000562754 QTRT1Q9BXR0 403 aaKnown RBP13.13□□□□□ -0.31
VPS4A-202ENST00000562754 ZNF702PQ9H963 129 aa13.13□□□□□ -0.31
VPS4A-202ENST00000562754 TMEM14BQ9NUH8 114 aa13.13□□□□□ -0.31
VPS4A-202ENST00000562754 MGAT4CQ9UBM8 478 aa13.13□□□□□ -0.31
VPS4A-202ENST00000562754 FOXA2Q9Y261 457 aaPredicted RBP13.13□□□□□ -0.31
VPS4A-202ENST00000562754 JMJD1CQ15652 2540 aa13.13□□□□□ -0.31
VPS4A-202ENST00000562754 A0A1B0GU03 582 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 A0A1B0GW64 132 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 PITX3O75364 302 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 SNAPC5O75971 98 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 FGF2P09038 288 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 SULT1A3P0DMM9 295 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 SULT1A4P0DMN0 295 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 SLC25A6P12236 298 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 RRAS2P62070 204 aaPredicted RBP13.12□□□□□ -0.31
VPS4A-202ENST00000562754 GNB1P62873 340 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 CX3CL1P78423 397 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 SMCO1Q147U7 214 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 TNXAQ16473 311 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 AARDQ4LEZ3 155 aa13.12□□□□□ -0.31
VPS4A-202ENST00000562754 OR11H7Q8NGC8 314 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms