RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 ZFAND1Q8TCF1 268 aa13.07□□□□□ -0.32
CLK3-207ENST00000562389 MYOZ3Q8TDC0 251 aa13.07□□□□□ -0.32
CLK3-207ENST00000562389 MRGPRFQ96AM1 343 aa13.07□□□□□ -0.32
CLK3-207ENST00000562389 R3HDM4Q96D70 268 aa13.07□□□□□ -0.32
CLK3-207ENST00000562389 TMEM68Q96MH6 324 aa13.07□□□□□ -0.32
CLK3-207ENST00000562389 PRRT1Q99946 306 aa13.07□□□□□ -0.32
CLK3-207ENST00000562389 SRRQ9GZT4 340 aa13.07□□□□□ -0.32
CLK3-207ENST00000562389 SLC2A8Q9NY64 477 aa13.07□□□□□ -0.32
CLK3-207ENST00000562389 BET1LQ9NYM9 111 aa13.07□□□□□ -0.32
CLK3-207ENST00000562389 FOXA2Q9Y261 457 aaPredicted RBP13.07□□□□□ -0.32
CLK3-207ENST00000562389 WNK1Q9H4A3 2382 aa13.07□□□□□ -0.32
CLK3-207ENST00000562389 SOX15O60248 233 aa13.06□□□□□ -0.32
CLK3-207ENST00000562389 SLC6A1P30531 599 aa13.06□□□□□ -0.32
CLK3-207ENST00000562389 AP3S2P59780 193 aa13.06□□□□□ -0.32
CLK3-207ENST00000562389 KLF9Q13886 244 aaPredicted RBP13.06□□□□□ -0.32
CLK3-207ENST00000562389 SURF2Q15527 256 aaPredicted RBP13.06□□□□□ -0.32
CLK3-207ENST00000562389 ZNF585BQ52M93 769 aa13.06□□□□□ -0.32
CLK3-207ENST00000562389 OR4A47Q6IF82 309 aa13.06□□□□□ -0.32
CLK3-207ENST00000562389 LCNL1Q6ZST4 164 aa13.06□□□□□ -0.32
CLK3-207ENST00000562389 SSX9Q7RTT3 188 aa13.06□□□□□ -0.32
CLK3-207ENST00000562389 OR5M8Q8NGP6 311 aa13.06□□□□□ -0.32
CLK3-207ENST00000562389 OR13C8Q8NGS7 320 aa13.06□□□□□ -0.32
CLK3-207ENST00000562389 FAM110DQ8TAY7 271 aaPredicted RBP13.06□□□□□ -0.32
CLK3-207ENST00000562389 SRSF12Q8WXF0 261 aaKnown RBP13.06□□□□□ -0.32
CLK3-207ENST00000562389 DEDD2Q8WXF8 326 aa13.06□□□□□ -0.32
CLK3-207ENST00000562389 MPPED1O15442 326 aa13.05□□□□□ -0.32
CLK3-207ENST00000562389 ACTL6BO94805 426 aa13.05□□□□□ -0.32
CLK3-207ENST00000562389 CTSDP07339 412 aaPredicted RBP13.05□□□□□ -0.32
CLK3-207ENST00000562389 PI3P19957 117 aa13.05□□□□□ -0.32
CLK3-207ENST00000562389 MAS1LP35410 378 aa13.05□□□□□ -0.32
CLK3-207ENST00000562389 FAUP35544 74 aaKnown RBP13.05□□□□□ -0.32
CLK3-207ENST00000562389 LPAR6P43657 344 aa13.05□□□□□ -0.32
CLK3-207ENST00000562389 PIGPP57054 158 aa13.05□□□□□ -0.32
CLK3-207ENST00000562389 TMEM65Q6PI78 240 aa13.05□□□□□ -0.32
CLK3-207ENST00000562389 TOMM5Q8N4H5 51 aa13.05□□□□□ -0.32
CLK3-207ENST00000562389 OR51S1Q8NGJ8 323 aa13.05□□□□□ -0.32
CLK3-207ENST00000562389 MARCH1Q8TCQ1 289 aa13.05□□□□□ -0.32
CLK3-207ENST00000562389 SCP2D1Q9UJQ7 156 aa13.05□□□□□ -0.32
CLK3-207ENST00000562389 FBN3Q75N90 2809 aa13.05□□□□□ -0.32
CLK3-207ENST00000562389 MARCH11A6NNE9 402 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 IL6RP08887 468 aaPredicted RBP13.04□□□□□ -0.32
CLK3-207ENST00000562389 FGF2P09038 288 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 PF4V1P10720 104 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 CDX1P47902 265 aaPredicted RBP13.04□□□□□ -0.32
CLK3-207ENST00000562389 RAB9AP51151 201 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 ERVK-16P61578 105 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 ASPHD1Q5U4P2 390 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 C18orf65Q6ZTR6 163 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 ZNF695Q8IW36 515 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 CADM3Q8N126 398 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 GDPD1Q8N9F7 314 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 CCDC71LQ8N9Z2 235 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 KLHL30-AS1Q8NEE0 82 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 DMBX1Q8NFW5 382 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 PHB2Q99623 299 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 KLK15Q9H2R5 256 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 TMEM140Q9NV12 185 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 COPZ2Q9P299 210 aa13.04□□□□□ -0.32
CLK3-207ENST00000562389 MSGN1A6NI15 193 aa13.03□□□□□ -0.32
CLK3-207ENST00000562389 NUDT19A8MXV4 375 aa13.03□□□□□ -0.32
CLK3-207ENST00000562389 H0Y980 276 aa13.03□□□□□ -0.32
CLK3-207ENST00000562389 H3BUA1 57 aa13.03□□□□□ -0.32
CLK3-207ENST00000562389 RPL8P62917 257 aaKnown RBP13.03□□□□□ -0.32
CLK3-207ENST00000562389 KIAA0141Q14154 515 aaPredicted RBP13.03□□□□□ -0.32
CLK3-207ENST00000562389 CNPY1Q3B7I2 92 aa13.03□□□□□ -0.32
CLK3-207ENST00000562389 ZNF491Q8N8L2 437 aa13.03□□□□□ -0.32
CLK3-207ENST00000562389 C4orf3Q8WVX3 66 aa13.03□□□□□ -0.32
CLK3-207ENST00000562389 UBE2E2Q96LR5 201 aa13.03□□□□□ -0.32
CLK3-207ENST00000562389 SPIN2AQ99865 258 aa13.03□□□□□ -0.32
CLK3-207ENST00000562389 SPIN2BQ9BPZ2 258 aa13.03□□□□□ -0.32
CLK3-207ENST00000562389 HRASLSQ9HDD0 168 aa13.03□□□□□ -0.32
CLK3-207ENST00000562389 MCUBQ9NWR8 336 aa13.03□□□□□ -0.32
CLK3-207ENST00000562389 GPR132Q9UNW8 380 aa13.03□□□□□ -0.32
CLK3-207ENST00000562389 C14orf166Q9Y224 244 aaKnown RBP13.03□□□□□ -0.32
CLK3-207ENST00000562389 UPK2O00526 184 aa13.02□□□□□ -0.33
CLK3-207ENST00000562389 RPA2P15927 270 aa13.02□□□□□ -0.33
CLK3-207ENST00000562389 HLA-GP17693 338 aa13.02□□□□□ -0.33
CLK3-207ENST00000562389 CD40LGP29965 261 aa13.02□□□□□ -0.33
CLK3-207ENST00000562389 RPL27AP46776 148 aaKnown RBP13.02□□□□□ -0.33
CLK3-207ENST00000562389 ZNF45Q02386 682 aa13.02□□□□□ -0.33
CLK3-207ENST00000562389 C10orf55Q5SWW7 151 aa13.02□□□□□ -0.33
CLK3-207ENST00000562389 LINC00299Q6ZSB3 139 aa13.02□□□□□ -0.33
CLK3-207ENST00000562389 C8orf86Q6ZUL3 223 aa13.02□□□□□ -0.33
CLK3-207ENST00000562389 SDHCQ99643 169 aaPredicted RBP13.02□□□□□ -0.33
CLK3-207ENST00000562389 RTBDNQ9BSG5 229 aaPredicted RBP13.02□□□□□ -0.33
CLK3-207ENST00000562389 C5orf66Q9H5L9 145 aa13.02□□□□□ -0.33
CLK3-207ENST00000562389 SLA2Q9H6Q3 261 aa13.02□□□□□ -0.33
CLK3-207ENST00000562389 BATF3Q9NR55 127 aa13.02□□□□□ -0.33
CLK3-207ENST00000562389 C3orf85A0A1B0GTC6 90 aa13.01□□□□□ -0.33
CLK3-207ENST00000562389 B3GALNT1O75752 331 aa13.01□□□□□ -0.33
CLK3-207ENST00000562389 BRI3O95415 125 aa13.01□□□□□ -0.33
CLK3-207ENST00000562389 KRASP01116 189 aa13.01□□□□□ -0.33
CLK3-207ENST00000562389 IGKV1-39P01597 117 aa13.01□□□□□ -0.33
CLK3-207ENST00000562389 PF4P02776 101 aa13.01□□□□□ -0.33
CLK3-207ENST00000562389 IGKV1D-39P04432 117 aa13.01□□□□□ -0.33
CLK3-207ENST00000562389 G6PCP35575 357 aa13.01□□□□□ -0.33
CLK3-207ENST00000562389 BAK1Q16611 211 aa13.01□□□□□ -0.33
CLK3-207ENST00000562389 ETV3LQ6ZN32 361 aa13.01□□□□□ -0.33
CLK3-207ENST00000562389 SCGB3A2Q96PL1 93 aa13.01□□□□□ -0.33
CLK3-207ENST00000562389 TP53RKQ96S44 253 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms