RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 H0Y980 276 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 ARPC1BO15143 372 aaKnown RBP10.19□□□□□ -0.78
NEDD8-208ENST00000560427 MPPED1O15442 326 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 S1PR2O95136 353 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 IGLV1-40P01703 118 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 RPA2P15927 270 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 CD40LGP29965 261 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 PIGPP57054 158 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 RPL23AP62750 156 aaKnown RBP10.19□□□□□ -0.78
NEDD8-208ENST00000560427 GNB1P62873 340 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 SSBP2P81877 361 aaPredicted RBP10.19□□□□□ -0.78
NEDD8-208ENST00000560427 ECSCRQ19T08 205 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 MRGPRG-AS1Q2M3A8 158 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 CNPY1Q3B7I2 92 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 TRIQKQ629K1 86 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 IDO2Q6ZQW0 420 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 VKORC1L1Q8N0U8 176 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 OR51S1Q8NGJ8 323 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 MRGPRFQ96AM1 343 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 ZNF430Q9H8G1 570 aaPredicted RBP10.19□□□□□ -0.78
NEDD8-208ENST00000560427 MCUBQ9NWR8 336 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 PTTG2Q9NZH5 202 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 FBXO7Q9Y3I1 522 aa10.19□□□□□ -0.78
NEDD8-208ENST00000560427 MARCH11A6NNE9 402 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 G3V318 75 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 H3BUA1 57 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 BRI3O95415 125 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 INPP1P49441 399 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 RPL8P62917 257 aaKnown RBP10.18□□□□□ -0.78
NEDD8-208ENST00000560427 PJVKQ0ZLH3 352 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 TNXAQ16473 311 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 ZNF585BQ52M93 769 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 KHDC1LQ5JSQ8 128 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 OR4A47Q6IF82 309 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 TMEM65Q6PI78 240 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 UNQ5815/PRO19632Q6UWF5 114 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 DMBX1Q8NFW5 382 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 GRPEL2Q8TAA5 225 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 MARCH1Q8TCQ1 289 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 MYOZ3Q8TDC0 251 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 SRSF12Q8WXF0 261 aaKnown RBP10.18□□□□□ -0.78
NEDD8-208ENST00000560427 R3HDM4Q96D70 268 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 SPIN2AQ99865 258 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 SPIN2BQ9BPZ2 258 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 FAM103A1Q9BTL3 118 aaKnown RBP10.18□□□□□ -0.78
NEDD8-208ENST00000560427 HRASLSQ9HDD0 168 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 TMEM140Q9NV12 185 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 GPR132Q9UNW8 380 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 WSB1Q9Y6I7 421 aa10.18□□□□□ -0.78
NEDD8-208ENST00000560427 A0A1W2PN81 502 aa10.17□□□□□ -0.78
NEDD8-208ENST00000560427 NAP1L6A6NFF2 107 aa10.17□□□□□ -0.78
NEDD8-208ENST00000560427 ATG12O94817 140 aa10.17□□□□□ -0.78
NEDD8-208ENST00000560427 SERPINE2P07093 398 aa10.17□□□□□ -0.78
NEDD8-208ENST00000560427 IL6RP08887 468 aaPredicted RBP10.17□□□□□ -0.78
NEDD8-208ENST00000560427 HLA-GP17693 338 aa10.17□□□□□ -0.78
NEDD8-208ENST00000560427 PI3P19957 117 aa10.17□□□□□ -0.78
NEDD8-208ENST00000560427 CHRNA7P36544 502 aa10.17□□□□□ -0.78
NEDD8-208ENST00000560427 LPAR6P43657 344 aa10.17□□□□□ -0.78
NEDD8-208ENST00000560427 CDX1P47902 265 aaPredicted RBP10.17□□□□□ -0.78
NEDD8-208ENST00000560427 NSUN5P1Q3KNT7 163 aa10.17□□□□□ -0.78
NEDD8-208ENST00000560427 TREML4Q6UXN2 200 aa10.17□□□□□ -0.78
NEDD8-208ENST00000560427 SSX9Q7RTT3 188 aa10.17□□□□□ -0.78
NEDD8-208ENST00000560427 LFNGQ8NES3 379 aa10.17□□□□□ -0.78
NEDD8-208ENST00000560427 S100ZQ8WXG8 99 aa10.17□□□□□ -0.78
NEDD8-208ENST00000560427 TSC22D3Q99576 134 aa10.17□□□□□ -0.78
NEDD8-208ENST00000560427 SLC25A21Q9BQT8 299 aaPredicted RBP10.17□□□□□ -0.78
NEDD8-208ENST00000560427 SLA2Q9H6Q3 261 aa10.17□□□□□ -0.78
NEDD8-208ENST00000560427 C3orf85A0A1B0GTC6 90 aa10.16□□□□□ -0.78
NEDD8-208ENST00000560427 UPK2O00526 184 aa10.16□□□□□ -0.78
NEDD8-208ENST00000560427 TSPAN15O95858 294 aa10.16□□□□□ -0.78
NEDD8-208ENST00000560427 RPLP1P05386 114 aaKnown RBP10.16□□□□□ -0.78
NEDD8-208ENST00000560427 RPL27AP46776 148 aaKnown RBP10.16□□□□□ -0.78
NEDD8-208ENST00000560427 ZNF57Q68EA5 555 aaPredicted RBP10.16□□□□□ -0.78
NEDD8-208ENST00000560427 THOC7Q6I9Y2 204 aaKnown RBP10.16□□□□□ -0.78
NEDD8-208ENST00000560427 ZNF695Q8IW36 515 aa10.16□□□□□ -0.78
NEDD8-208ENST00000560427 UBE2E2Q96LR5 201 aa10.16□□□□□ -0.78
NEDD8-208ENST00000560427 PHB2Q99623 299 aa10.16□□□□□ -0.78
NEDD8-208ENST00000560427 SDHCQ99643 169 aaPredicted RBP10.16□□□□□ -0.78
NEDD8-208ENST00000560427 C7orf50Q9BRJ6 194 aaKnown RBP10.16□□□□□ -0.78
NEDD8-208ENST00000560427 SRSF8Q9BRL6 282 aaKnown RBP10.16□□□□□ -0.78
NEDD8-208ENST00000560427 CCDC32Q9BV29 185 aa10.16□□□□□ -0.78
NEDD8-208ENST00000560427 C5orf66Q9H5L9 145 aa10.16□□□□□ -0.78
NEDD8-208ENST00000560427 AKIP1Q9NQ31 210 aa10.16□□□□□ -0.78
NEDD8-208ENST00000560427 PIGBOS1A0A0B4J2F0 54 aa10.15□□□□□ -0.78
NEDD8-208ENST00000560427 A0A1W2PRX2 142 aa10.15□□□□□ -0.78
NEDD8-208ENST00000560427 MSGN1A6NI15 193 aa10.15□□□□□ -0.78
NEDD8-208ENST00000560427 SOX15O60248 233 aa10.15□□□□□ -0.78
NEDD8-208ENST00000560427 KRASP01116 189 aa10.15□□□□□ -0.78
NEDD8-208ENST00000560427 PF4V1P10720 104 aa10.15□□□□□ -0.78
NEDD8-208ENST00000560427 IL7P13232 177 aa10.15□□□□□ -0.78
NEDD8-208ENST00000560427 UCP1P25874 307 aa10.15□□□□□ -0.78
NEDD8-208ENST00000560427 RAB9AP51151 201 aa10.15□□□□□ -0.78
NEDD8-208ENST00000560427 BAK1Q16611 211 aa10.15□□□□□ -0.78
NEDD8-208ENST00000560427 SLC25A42Q86VD7 318 aa10.15□□□□□ -0.78
NEDD8-208ENST00000560427 FAM110DQ8TAY7 271 aaPredicted RBP10.15□□□□□ -0.78
NEDD8-208ENST00000560427 C4orf3Q8WVX3 66 aa10.15□□□□□ -0.78
NEDD8-208ENST00000560427 TP53RKQ96S44 253 aa10.15□□□□□ -0.78
NEDD8-208ENST00000560427 RTBDNQ9BSG5 229 aaPredicted RBP10.15□□□□□ -0.78
NEDD8-208ENST00000560427 COMMD5Q9GZQ3 224 aa10.15□□□□□ -0.78
NEDD8-208ENST00000560427 NAA60Q9H7X0 242 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms