RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TMEM167AQ8TBQ9 72 aa17.14■□□□□ 0.33
SNX1-210ENST00000560260 OR2A7Q96R45 310 aa17.14■□□□□ 0.33
SNX1-210ENST00000560260 FAM103A1Q9BTL3 118 aaKnown RBP17.14■□□□□ 0.33
SNX1-210ENST00000560260 TMEM140Q9NV12 185 aa17.14■□□□□ 0.33
SNX1-210ENST00000560260 PRR13Q9NZ81 148 aa17.14■□□□□ 0.33
SNX1-210ENST00000560260 TNCP24821 2201 aa17.13■□□□□ 0.33
SNX1-210ENST00000560260 MARCH11A6NNE9 402 aa17.13■□□□□ 0.33
SNX1-210ENST00000560260 AP4M1O00189 453 aa17.13■□□□□ 0.33
SNX1-210ENST00000560260 IGF1P05019 195 aa17.13■□□□□ 0.33
SNX1-210ENST00000560260 AKR1C4P17516 323 aa17.13■□□□□ 0.33
SNX1-210ENST00000560260 GNB1P62873 340 aa17.13■□□□□ 0.33
SNX1-210ENST00000560260 ZNF562Q6V9R5 426 aa17.13■□□□□ 0.33
SNX1-210ENST00000560260 FOXRED2Q8IWF2 684 aa17.13■□□□□ 0.33
SNX1-210ENST00000560260 GLYATL2Q8WU03 294 aa17.13■□□□□ 0.33
SNX1-210ENST00000560260 BET1LQ9NYM9 111 aa17.13■□□□□ 0.33
SNX1-210ENST00000560260 KRASP01116 189 aa17.12■□□□□ 0.33
SNX1-210ENST00000560260 SERPINE2P07093 398 aa17.12■□□□□ 0.33
SNX1-210ENST00000560260 MYOD1P15172 320 aa17.12■□□□□ 0.33
SNX1-210ENST00000560260 CFHR3Q02985 330 aa17.12■□□□□ 0.33
SNX1-210ENST00000560260 FXYD3Q14802 87 aa17.12■□□□□ 0.33
SNX1-210ENST00000560260 C19orf54Q5BKX5 351 aa17.12■□□□□ 0.33
SNX1-210ENST00000560260 DMBX1Q8NFW5 382 aa17.12■□□□□ 0.33
SNX1-210ENST00000560260 VSTM2AQ8TAG5 236 aa17.12■□□□□ 0.33
SNX1-210ENST00000560260 ARPC1AQ92747 370 aa17.12■□□□□ 0.33
SNX1-210ENST00000560260 SEC22AQ96IW7 307 aa17.12■□□□□ 0.33
SNX1-210ENST00000560260 G3V318 75 aa17.11■□□□□ 0.33
SNX1-210ENST00000560260 IGKV1-5P01602 117 aa17.11■□□□□ 0.33
SNX1-210ENST00000560260 SLC6A1P30531 599 aa17.11■□□□□ 0.33
SNX1-210ENST00000560260 CRIP2P52943 208 aaPredicted RBP17.11■□□□□ 0.33
SNX1-210ENST00000560260 DHODHQ02127 395 aa17.11■□□□□ 0.33
SNX1-210ENST00000560260 TMEM187Q14656 261 aa17.11■□□□□ 0.33
SNX1-210ENST00000560260 TNXAQ16473 311 aa17.11■□□□□ 0.33
SNX1-210ENST00000560260 ZNF329Q86UD4 541 aa17.11■□□□□ 0.33
SNX1-210ENST00000560260 SGPP2Q8IWX5 399 aa17.11■□□□□ 0.33
SNX1-210ENST00000560260 GRPEL2Q8TAA5 225 aa17.11■□□□□ 0.33
SNX1-210ENST00000560260 GALNT14Q96FL9 552 aa17.11■□□□□ 0.33
SNX1-210ENST00000560260 ZNF747Q9BV97 191 aa17.11■□□□□ 0.33
SNX1-210ENST00000560260 TMEM222Q9H0R3 208 aa17.11■□□□□ 0.33
SNX1-210ENST00000560260 ZNF580Q9UK33 172 aa17.11■□□□□ 0.33
SNX1-210ENST00000560260 WSB1Q9Y6I7 421 aa17.11■□□□□ 0.33
SNX1-210ENST00000560260 UPK2O00526 184 aa17.1■□□□□ 0.33
SNX1-210ENST00000560260 OR9G9P0C7N8 305 aa17.1■□□□□ 0.33
SNX1-210ENST00000560260 P0C879 139 aa17.1■□□□□ 0.33
SNX1-210ENST00000560260 ERVK-16P61578 105 aa17.1■□□□□ 0.33
SNX1-210ENST00000560260 SLC25A42Q86VD7 318 aa17.1■□□□□ 0.33
SNX1-210ENST00000560260 MMD2Q8IY49 270 aa17.1■□□□□ 0.33
SNX1-210ENST00000560260 CENPSQ8N2Z9 138 aa17.1■□□□□ 0.33
SNX1-210ENST00000560260 C11orf44Q8N8P7 122 aa17.1■□□□□ 0.33
SNX1-210ENST00000560260 A0A0G2JRQ6 117 aa17.09■□□□□ 0.33
SNX1-210ENST00000560260 A0A1B0GW64 132 aa17.09■□□□□ 0.33
SNX1-210ENST00000560260 PPP1R1AQ13522 171 aa17.09■□□□□ 0.33
SNX1-210ENST00000560260 ECSCRQ19T08 205 aa17.09■□□□□ 0.33
SNX1-210ENST00000560260 TRIM16LQ309B1 348 aa17.09■□□□□ 0.33
SNX1-210ENST00000560260 TCTEX1D4Q5JR98 221 aa17.09■□□□□ 0.33
SNX1-210ENST00000560260 OR4A5Q8NH83 315 aa17.09■□□□□ 0.33
SNX1-210ENST00000560260 ABHD5Q8WTS1 349 aa17.09■□□□□ 0.33
SNX1-210ENST00000560260 CHPT1Q8WUD6 406 aa17.09■□□□□ 0.33
SNX1-210ENST00000560260 AIFM2Q9BRQ8 373 aa17.09■□□□□ 0.33
SNX1-210ENST00000560260 C20orf85Q9H1P6 137 aa17.09■□□□□ 0.33
SNX1-210ENST00000560260 PSMB11A5LHX3 300 aa17.08■□□□□ 0.32
SNX1-210ENST00000560260 E7EUB6 86 aa17.08■□□□□ 0.32
SNX1-210ENST00000560260 B3GALNT1O75752 331 aa17.08■□□□□ 0.32
SNX1-210ENST00000560260 CNIH1O95406 144 aa17.08■□□□□ 0.32
SNX1-210ENST00000560260 CDS2O95674 445 aa17.08■□□□□ 0.32
SNX1-210ENST00000560260 TCRBP04435 133 aa17.08■□□□□ 0.32
SNX1-210ENST00000560260 CD28P10747 220 aa17.08■□□□□ 0.32
SNX1-210ENST00000560260 ANXA7P20073 488 aaKnown RBP17.08■□□□□ 0.32
SNX1-210ENST00000560260 IZUMO4Q1ZYL8 232 aa17.08■□□□□ 0.32
SNX1-210ENST00000560260 TMEM128Q5BJH2 165 aa17.08■□□□□ 0.32
SNX1-210ENST00000560260 ASPHD1Q5U4P2 390 aa17.08■□□□□ 0.32
SNX1-210ENST00000560260 CENPVQ7Z7K6 275 aaPredicted RBP17.08■□□□□ 0.32
SNX1-210ENST00000560260 SELENOHQ8IZQ5 122 aaKnown RBP17.08■□□□□ 0.32
SNX1-210ENST00000560260 C3orf56Q8N813 242 aa17.08■□□□□ 0.32
SNX1-210ENST00000560260 SGMS2Q8NHU3 365 aa17.08■□□□□ 0.32
SNX1-210ENST00000560260 SRSF12Q8WXF0 261 aaKnown RBP17.08■□□□□ 0.32
SNX1-210ENST00000560260 TSC22D3Q99576 134 aa17.08■□□□□ 0.32
SNX1-210ENST00000560260 CITED1Q99966 193 aa17.08■□□□□ 0.32
SNX1-210ENST00000560260 NSG2Q9Y328 171 aa17.08■□□□□ 0.32
SNX1-210ENST00000560260 NUBP2Q9Y5Y2 271 aa17.08■□□□□ 0.32
SNX1-210ENST00000560260 TRAV41A0A0B4J266 112 aa17.07■□□□□ 0.32
SNX1-210ENST00000560260 CGB1A6NKQ9 187 aa17.07■□□□□ 0.32
SNX1-210ENST00000560260 DBX1A6NMT0 343 aa17.07■□□□□ 0.32
SNX1-210ENST00000560260 HLA-GP17693 338 aa17.07■□□□□ 0.32
SNX1-210ENST00000560260 PPIFP30405 207 aaKnown RBP17.07■□□□□ 0.32
SNX1-210ENST00000560260 RPL8P62917 257 aaKnown RBP17.07■□□□□ 0.32
SNX1-210ENST00000560260 CADM3Q8N126 398 aa17.07■□□□□ 0.32
SNX1-210ENST00000560260 OR5AU1Q8NGC0 362 aa17.07■□□□□ 0.32
SNX1-210ENST00000560260 TMEM56Q96MV1 263 aa17.07■□□□□ 0.32
SNX1-210ENST00000560260 TMEM56-RWDD3S4R434 201 aa17.07■□□□□ 0.32
SNX1-210ENST00000560260 SOX15O60248 233 aa17.06■□□□□ 0.32
SNX1-210ENST00000560260 CREBL2O60519 120 aaPredicted RBP17.06■□□□□ 0.32
SNX1-210ENST00000560260 SFT2D2O95562 160 aa17.06■□□□□ 0.32
SNX1-210ENST00000560260 VDAC1P21796 283 aa17.06■□□□□ 0.32
SNX1-210ENST00000560260 OR2B8PP59922 312 aa17.06■□□□□ 0.32
SNX1-210ENST00000560260 TMEM268Q5VZI3 342 aa17.06■□□□□ 0.32
SNX1-210ENST00000560260 MZT2BQ6NZ67 158 aa17.06■□□□□ 0.32
SNX1-210ENST00000560260 LFNGQ8NES3 379 aa17.06■□□□□ 0.32
SNX1-210ENST00000560260 SPATA3Q8NHX4 192 aa17.06■□□□□ 0.32
SNX1-210ENST00000560260 TRAV6A0A075B6T7 132 aa17.05■□□□□ 0.32
SNX1-210ENST00000560260 FAM240BA0A1B0GVZ2 78 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms