RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 OR4E1P0C645 316 aa11.12□□□□□ -0.63
VIPAS39-208ENST00000556412 CX3CL1P78423 397 aa11.12□□□□□ -0.63
VIPAS39-208ENST00000556412 TMEM187Q14656 261 aa11.12□□□□□ -0.63
VIPAS39-208ENST00000556412 TNXAQ16473 311 aa11.12□□□□□ -0.63
VIPAS39-208ENST00000556412 H2BFWTQ7Z2G1 175 aa11.12□□□□□ -0.63
VIPAS39-208ENST00000556412 LINC01006Q8NI28 216 aa11.12□□□□□ -0.63
VIPAS39-208ENST00000556412 GRPEL2Q8TAA5 225 aa11.12□□□□□ -0.63
VIPAS39-208ENST00000556412 LHFPL5Q8TAF8 219 aa11.12□□□□□ -0.63
VIPAS39-208ENST00000556412 ZNF430Q9H8G1 570 aaPredicted RBP11.12□□□□□ -0.63
VIPAS39-208ENST00000556412 IGHV7-81A0A0B4J1V7 117 aa11.11□□□□□ -0.63
VIPAS39-208ENST00000556412 HAX1O00165 279 aa11.11□□□□□ -0.63
VIPAS39-208ENST00000556412 CREBL2O60519 120 aaPredicted RBP11.11□□□□□ -0.63
VIPAS39-208ENST00000556412 ATG12O94817 140 aa11.11□□□□□ -0.63
VIPAS39-208ENST00000556412 PRSS8Q16651 343 aa11.11□□□□□ -0.63
VIPAS39-208ENST00000556412 FOXRED2Q8IWF2 684 aa11.11□□□□□ -0.63
VIPAS39-208ENST00000556412 PUSL1Q8N0Z8 303 aaKnown RBP11.11□□□□□ -0.63
VIPAS39-208ENST00000556412 RBPMSQ93062 196 aaKnown RBP11.11□□□□□ -0.63
VIPAS39-208ENST00000556412 RRNAD1Q96FB5 475 aaKnown RBP11.11□□□□□ -0.63
VIPAS39-208ENST00000556412 SEC22AQ96IW7 307 aa11.11□□□□□ -0.63
VIPAS39-208ENST00000556412 FAM103A1Q9BTL3 118 aaKnown RBP11.11□□□□□ -0.63
VIPAS39-208ENST00000556412 NSG2Q9Y328 171 aa11.11□□□□□ -0.63
VIPAS39-208ENST00000556412 TRAV3A0A0B4J244 114 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 C9orf170A2RU37 121 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 KCNAB3O43448 404 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 RBMXL2O75526 392 aaKnown RBP11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 CDS2O95674 445 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 IGHG2P01859 326 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 OPN1MWP04001 364 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 OPN1MW2P0DN77 364 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 OPN1MW3P0DN78 364 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 SPNP16150 400 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 UBE2MP61081 183 aaKnown RBP11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 FOXL1Q12952 345 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 DHRS2Q13268 280 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 FXYD3Q14802 87 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 POU2AF1Q16633 256 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 IZUMO4Q1ZYL8 232 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 MMD2Q8IY49 270 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 SELENOHQ8IZQ5 122 aaKnown RBP11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 LGI3Q8N145 548 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 Q8N2B8 174 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 DUSP18Q8NEJ0 188 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 OR52B4Q8NGK2 314 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 TMEM167AQ8TBQ9 72 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 NOL4LQ96MY1 436 aaPredicted RBP11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 OR51J1Q9H342 316 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 C16orf95Q9H693 158 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 BET1LQ9NYM9 111 aa11.1□□□□□ -0.63
VIPAS39-208ENST00000556412 ATP6V0E1O15342 81 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 SNAPC5O75971 98 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 PTTG1O95997 202 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 IGKV1-5P01602 117 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 OR2B8PP59922 312 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 RPL8P62917 257 aaKnown RBP11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 SRPXP78539 464 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 NDPQ00604 133 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 ANKRD55Q3KP44 614 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 C10orf55Q5SWW7 151 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 ZNF562Q6V9R5 426 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 LYG2Q86SG7 212 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 SLC35G3Q8N808 338 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 OR4A5Q8NH83 315 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 ARPC1AQ92747 370 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 TMEM56Q96MV1 263 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 SEC22CQ9BRL7 303 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 SERTAD4Q9NUC0 356 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 RNF114Q9Y508 228 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 TMEM56-RWDD3S4R434 201 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 CLPSL1A2RUU4 121 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 INMT-MINDY4F8WBC2 141 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 AP4M1O00189 453 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 UPK2O00526 184 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 OR9G9P0C7N8 305 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 MYOD1P15172 320 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 HLA-GP17693 338 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 ECSCRQ19T08 205 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 RGS21Q2M5E4 152 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 PHB2Q99623 299 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 WSB1Q9Y6I7 421 aa11.09□□□□□ -0.63
VIPAS39-208ENST00000556412 TMEM89A2RUT3 159 aa11.08□□□□□ -0.64
VIPAS39-208ENST00000556412 APELAP0DMC3 54 aa11.08□□□□□ -0.64
VIPAS39-208ENST00000556412 MRGPRG-AS1Q2M3A8 158 aa11.08□□□□□ -0.64
VIPAS39-208ENST00000556412 LYZL2Q7Z4W2 148 aa11.08□□□□□ -0.64
VIPAS39-208ENST00000556412 OR4A16Q8NH70 328 aa11.08□□□□□ -0.64
VIPAS39-208ENST00000556412 COQ8AQ8NI60 647 aa11.08□□□□□ -0.64
VIPAS39-208ENST00000556412 COMMD5Q9GZQ3 224 aa11.08□□□□□ -0.64
VIPAS39-208ENST00000556412 ALX4Q9H161 411 aaPredicted RBP11.08□□□□□ -0.64
VIPAS39-208ENST00000556412 FBXO7Q9Y3I1 522 aa11.08□□□□□ -0.64
VIPAS39-208ENST00000556412 A0A0G2JRQ6 117 aa11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 VDAC1P21796 283 aa11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 SSBP2P81877 361 aaPredicted RBP11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 AWAT1Q58HT5 328 aa11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 CENPVQ7Z7K6 275 aaPredicted RBP11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 KLHDC1Q8N7A1 406 aa11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 UXS1Q8NBZ7 420 aa11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 SRSF12Q8WXF0 261 aaKnown RBP11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 IL22RA2Q969J5 263 aa11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 FYTTD1Q96QD9 318 aaKnown RBP11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 HINT2Q9BX68 163 aa11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 MMP24Q9Y5R2 645 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms