RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PAX5Q02548 391 aa12.45□□□□□ -0.42
CUX1-215ENST00000556210 WDR86Q86TI4 376 aa12.45□□□□□ -0.42
CUX1-215ENST00000556210 LYPD6BQ8NI32 183 aa12.45□□□□□ -0.42
CUX1-215ENST00000556210 SLC35D1Q9NTN3 355 aa12.45□□□□□ -0.42
CUX1-215ENST00000556210 NKX6-3A6NJ46 265 aa12.45□□□□□ -0.42
CUX1-215ENST00000556210 APOA2P02652 100 aa12.45□□□□□ -0.42
CUX1-215ENST00000556210 WDR82Q6UXN9 313 aa12.45□□□□□ -0.42
CUX1-215ENST00000556210 NOL4LQ96MY1 436 aaPredicted RBP12.45□□□□□ -0.42
CUX1-215ENST00000556210 TPPP3Q9BW30 176 aa12.45□□□□□ -0.42
CUX1-215ENST00000556210 SRD5A3Q9H8P0 318 aa12.45□□□□□ -0.42
CUX1-215ENST00000556210 IGHV2OR16-5A0A0B4J2B6 119 aa12.45□□□□□ -0.42
CUX1-215ENST00000556210 FOXI3A8MTJ6 420 aaPredicted RBP12.45□□□□□ -0.42
CUX1-215ENST00000556210 ERVFC1-1P60608 527 aa12.45□□□□□ -0.42
CUX1-215ENST00000556210 MISP3Q96FF7 219 aa12.45□□□□□ -0.42
CUX1-215ENST00000556210 WDR61Q9GZS3 305 aaKnown RBP12.45□□□□□ -0.42
CUX1-215ENST00000556210 KIR2DL2P43627 348 aaPredicted RBP12.44□□□□□ -0.42
CUX1-215ENST00000556210 RTL8BQ17RB0 113 aa12.44□□□□□ -0.42
CUX1-215ENST00000556210 ZNF525Q8N782 197 aa12.44□□□□□ -0.42
CUX1-215ENST00000556210 BTF3L4Q96K17 158 aa12.44□□□□□ -0.42
CUX1-215ENST00000556210 C10orf142B7Z368 130 aa12.44□□□□□ -0.42
CUX1-215ENST00000556210 MLNRO43193 412 aa12.44□□□□□ -0.42
CUX1-215ENST00000556210 RNF151Q2KHN1 245 aa12.44□□□□□ -0.42
CUX1-215ENST00000556210 LINC00596Q86U02 117 aa12.44□□□□□ -0.42
CUX1-215ENST00000556210 PARLQ9H300 379 aa12.44□□□□□ -0.42
CUX1-215ENST00000556210 MYOD1P15172 320 aa12.44□□□□□ -0.42
CUX1-215ENST00000556210 KRTDAPP60985 99 aa12.44□□□□□ -0.42
CUX1-215ENST00000556210 ZNF497Q6ZNH5 498 aa12.44□□□□□ -0.42
CUX1-215ENST00000556210 COLCA1Q6ZS62 124 aa12.44□□□□□ -0.42
CUX1-215ENST00000556210 ZNRD1Q9P1U0 126 aa12.44□□□□□ -0.42
CUX1-215ENST00000556210 PPIHO43447 177 aaKnown RBP12.43□□□□□ -0.42
CUX1-215ENST00000556210 CNIH1O95406 144 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 HRASP01112 189 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 OPRK1P41145 380 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 RPL31P62899 125 aaKnown RBP12.43□□□□□ -0.42
CUX1-215ENST00000556210 TMEM108Q6UXF1 575 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 Q6ZPA2 131 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 BLNKQ8WV28 456 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 TXN2Q99757 166 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 OR6C3Q9NZP0 311 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 RNF7Q9UBF6 113 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 MRPS18CQ9Y3D5 142 aaKnown RBP12.43□□□□□ -0.42
CUX1-215ENST00000556210 TMEM210A6NLX4 147 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 PLXNB1O43157 2135 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 CNN1P51911 297 aaKnown RBP12.43□□□□□ -0.42
CUX1-215ENST00000556210 PSG5Q15238 335 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 SAP30LQ9HAJ7 183 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 PTPRQQ9UMZ3 2332 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 CTXND1A0A1B0GTU2 59 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 A0A1B0GW64 132 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 ZNF883P0CG24 379 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 NTF3P20783 257 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 ZNF124Q15973 351 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 ACSF3Q4G176 576 aaPredicted RBP12.43□□□□□ -0.42
CUX1-215ENST00000556210 MOB3BQ86TA1 216 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 MDS2Q8NDY4 140 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 TBX15Q96SF7 602 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 P2RX4Q99571 388 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 TMEM140Q9NV12 185 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 CALYQ9NYX4 217 aa12.43□□□□□ -0.42
CUX1-215ENST00000556210 ORM2P19652 201 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 CCKARP32238 428 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 P2RY6Q15077 328 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 RAB9BQ9NP90 201 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 PAM16Q9Y3D7 125 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 MUC3AQ02505 3323 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 BOD1L1Q8NFC6 3051 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 C1QTNF9BB2RNN3 333 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 J3QR06 171 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 MGST3O14880 152 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 GCGP01275 180 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 REG1AP05451 166 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 WT1P19544 449 aaPredicted RBP12.42□□□□□ -0.42
CUX1-215ENST00000556210 NPY1RP25929 384 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 NRN1LQ496H8 165 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 ASCL4Q6XD76 172 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 OR4S2Q8NH73 311 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 ELOVL1Q9BW60 279 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 SSUH2Q9Y2M2 353 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 H0Y8G0 127 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 H3BTX0 84 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 AMBPP02760 352 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 SGMS2Q8NHU3 365 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 ANAPC16Q96DE5 110 aa12.42□□□□□ -0.42
CUX1-215ENST00000556210 KBTBD11O94819 623 aa12.41□□□□□ -0.42
CUX1-215ENST00000556210 Q6P435 159 aa12.41□□□□□ -0.42
CUX1-215ENST00000556210 LHFPL4Q7Z7J7 247 aa12.41□□□□□ -0.42
CUX1-215ENST00000556210 NHLRC2Q8NBF2 726 aa12.41□□□□□ -0.42
CUX1-215ENST00000556210 CMTM2Q8TAZ6 248 aa12.41□□□□□ -0.42
CUX1-215ENST00000556210 PXMP4Q9Y6I8 212 aa12.41□□□□□ -0.42
CUX1-215ENST00000556210 LINC00473A8K010 186 aa12.41□□□□□ -0.42
CUX1-215ENST00000556210 JOSD1Q15040 202 aaPredicted RBP12.41□□□□□ -0.42
CUX1-215ENST00000556210 ETFRF1Q6IPR1 90 aa12.41□□□□□ -0.42
CUX1-215ENST00000556210 SNRNP40Q96DI7 357 aaKnown RBP12.41□□□□□ -0.42
CUX1-215ENST00000556210 SLC35E1Q96K37 410 aa12.41□□□□□ -0.42
CUX1-215ENST00000556210 HARBI1Q96MB7 349 aa12.41□□□□□ -0.42
CUX1-215ENST00000556210 TRAV3A0A0B4J244 114 aa12.41□□□□□ -0.42
CUX1-215ENST00000556210 TMEM11P17152 192 aa12.41□□□□□ -0.42
CUX1-215ENST00000556210 VAMP8Q9BV40 100 aa12.41□□□□□ -0.42
CUX1-215ENST00000556210 IGHV1-18A0A0C4DH31 117 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 IGKV1-39P01597 117 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms