RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 PJVKQ0ZLH3 352 aa10.86□□□□□ -0.67
PTCH1-213ENST00000546820 TNXAQ16473 311 aa10.86□□□□□ -0.67
PTCH1-213ENST00000546820 TRIM16LQ309B1 348 aa10.86□□□□□ -0.67
PTCH1-213ENST00000546820 OR4A47Q6IF82 309 aa10.86□□□□□ -0.67
PTCH1-213ENST00000546820 TMED4Q7Z7H5 227 aa10.86□□□□□ -0.67
PTCH1-213ENST00000546820 TMEM167AQ8TBQ9 72 aa10.86□□□□□ -0.67
PTCH1-213ENST00000546820 ARPC1AQ92747 370 aa10.86□□□□□ -0.67
PTCH1-213ENST00000546820 TMEM68Q96MH6 324 aa10.86□□□□□ -0.67
PTCH1-213ENST00000546820 NOL4LQ96MY1 436 aaPredicted RBP10.86□□□□□ -0.67
PTCH1-213ENST00000546820 TP53RKQ96S44 253 aa10.86□□□□□ -0.67
PTCH1-213ENST00000546820 TSC22D3Q99576 134 aa10.86□□□□□ -0.67
PTCH1-213ENST00000546820 BET1LQ9NYM9 111 aa10.86□□□□□ -0.67
PTCH1-213ENST00000546820 MARCH11A6NNE9 402 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 ATP6V0E1O15342 81 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 NDUFB6O95139 128 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 G6PCP35575 357 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 RPL8P62917 257 aaKnown RBP10.85□□□□□ -0.67
PTCH1-213ENST00000546820 SP6Q3SY56 376 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 AKIRIN2Q53H80 203 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 TMEM128Q5BJH2 165 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 TEX38Q6PEX7 206 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 H2BFWTQ7Z2G1 175 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 CENPSQ8N2Z9 138 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 COMMD1Q8N668 190 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 ADAD2Q8NCV1 583 aaKnown RBP10.85□□□□□ -0.67
PTCH1-213ENST00000546820 OR4X2Q8NGF9 303 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 SGMS2Q8NHU3 365 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 TMEM222Q9H0R3 208 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 ZNF430Q9H8G1 570 aaPredicted RBP10.85□□□□□ -0.67
PTCH1-213ENST00000546820 TPSG1Q9NRR2 321 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 TMEM140Q9NV12 185 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 FKBP11Q9NYL4 201 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 LINC00527Q9UJ94 153 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 WSB1Q9Y6I7 421 aa10.85□□□□□ -0.67
PTCH1-213ENST00000546820 TRAV41A0A0B4J266 112 aa10.84□□□□□ -0.67
PTCH1-213ENST00000546820 UPK2O00526 184 aa10.84□□□□□ -0.67
PTCH1-213ENST00000546820 FBXO24O75426 580 aa10.84□□□□□ -0.67
PTCH1-213ENST00000546820 CDS2O95674 445 aa10.84□□□□□ -0.67
PTCH1-213ENST00000546820 FGF2P09038 288 aa10.84□□□□□ -0.67
PTCH1-213ENST00000546820 OR5AC1P0C628 307 aa10.84□□□□□ -0.67
PTCH1-213ENST00000546820 UCP1P25874 307 aa10.84□□□□□ -0.67
PTCH1-213ENST00000546820 DEFA1P59665 94 aa10.84□□□□□ -0.67
PTCH1-213ENST00000546820 DEFA3P59666 94 aa10.84□□□□□ -0.67
PTCH1-213ENST00000546820 UBE2MP61081 183 aaKnown RBP10.84□□□□□ -0.67
PTCH1-213ENST00000546820 ZNF695Q8IW36 515 aa10.84□□□□□ -0.67
PTCH1-213ENST00000546820 GRPEL2Q8TAA5 225 aa10.84□□□□□ -0.67
PTCH1-213ENST00000546820 RRNAD1Q96FB5 475 aaKnown RBP10.84□□□□□ -0.67
PTCH1-213ENST00000546820 GALNT14Q96FL9 552 aa10.84□□□□□ -0.67
PTCH1-213ENST00000546820 PHB2Q99623 299 aa10.84□□□□□ -0.67
PTCH1-213ENST00000546820 SPIN2AQ99865 258 aa10.84□□□□□ -0.67
PTCH1-213ENST00000546820 SPIN2BQ9BPZ2 258 aa10.84□□□□□ -0.67
PTCH1-213ENST00000546820 NUBP2Q9Y5Y2 271 aa10.84□□□□□ -0.67
PTCH1-213ENST00000546820 FAM240BA0A1B0GVZ2 78 aa10.83□□□□□ -0.68
PTCH1-213ENST00000546820 MSGN1A6NI15 193 aa10.83□□□□□ -0.68
PTCH1-213ENST00000546820 ARPC1BO15143 372 aaKnown RBP10.83□□□□□ -0.68
PTCH1-213ENST00000546820 IL6RP08887 468 aaPredicted RBP10.83□□□□□ -0.68
PTCH1-213ENST00000546820 HLA-GP17693 338 aa10.83□□□□□ -0.68
PTCH1-213ENST00000546820 CRIP2P52943 208 aaPredicted RBP10.83□□□□□ -0.68
PTCH1-213ENST00000546820 RAB25P57735 213 aa10.83□□□□□ -0.68
PTCH1-213ENST00000546820 SRPXP78539 464 aa10.83□□□□□ -0.68
PTCH1-213ENST00000546820 ASAH1Q13510 395 aa10.83□□□□□ -0.68
PTCH1-213ENST00000546820 TMEM65Q6PI78 240 aa10.83□□□□□ -0.68
PTCH1-213ENST00000546820 UNQ5815/PRO19632Q6UWF5 114 aa10.83□□□□□ -0.68
PTCH1-213ENST00000546820 ZNF329Q86UD4 541 aa10.83□□□□□ -0.68
PTCH1-213ENST00000546820 SLC25A42Q86VD7 318 aa10.83□□□□□ -0.68
PTCH1-213ENST00000546820 LFNGQ8NES3 379 aa10.83□□□□□ -0.68
PTCH1-213ENST00000546820 RNASE11Q8TAA1 199 aaKnown RBP10.83□□□□□ -0.68
PTCH1-213ENST00000546820 GLYATL2Q8WU03 294 aa10.83□□□□□ -0.68
PTCH1-213ENST00000546820 TMEM230Q96A57 120 aa10.83□□□□□ -0.68
PTCH1-213ENST00000546820 SEC22AQ96IW7 307 aa10.83□□□□□ -0.68
PTCH1-213ENST00000546820 CITED1Q99966 193 aa10.83□□□□□ -0.68
PTCH1-213ENST00000546820 COMMD5Q9GZQ3 224 aa10.83□□□□□ -0.68
PTCH1-213ENST00000546820 TCRBV4S1A1TA0A5B7 111 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 OPN1MWP04001 364 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 ELANEP08246 267 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 OPN1MW2P0DN77 364 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 OPN1MW3P0DN78 364 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 EGR2P11161 476 aaPredicted RBP10.82□□□□□ -0.68
PTCH1-213ENST00000546820 VAMP1P23763 118 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 SLC6A1P30531 599 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 RPL27AP46776 148 aaKnown RBP10.82□□□□□ -0.68
PTCH1-213ENST00000546820 AKR1C2P52895 323 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 KRTAP10-3P60369 221 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 NDPQ00604 133 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 ECSCRQ19T08 205 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 MRGPRG-AS1Q2M3A8 158 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 CXorf66Q5JRM2 361 aaPredicted RBP10.82□□□□□ -0.68
PTCH1-213ENST00000546820 LGI3Q8N145 548 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 MINDY2Q8NBR6 621 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 OR4A16Q8NH70 328 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 WIPF2Q8TF74 440 aaPredicted RBP10.82□□□□□ -0.68
PTCH1-213ENST00000546820 SRSF12Q8WXF0 261 aaKnown RBP10.82□□□□□ -0.68
PTCH1-213ENST00000546820 RBPMSQ93062 196 aaKnown RBP10.82□□□□□ -0.68
PTCH1-213ENST00000546820 IL22RA2Q969J5 263 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 FAM103A1Q9BTL3 118 aaKnown RBP10.82□□□□□ -0.68
PTCH1-213ENST00000546820 PRNDQ9UKY0 176 aa10.82□□□□□ -0.68
PTCH1-213ENST00000546820 G3V318 75 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 RBMXL2O75526 392 aaKnown RBP10.81□□□□□ -0.68
PTCH1-213ENST00000546820 IGKV1-39P01597 117 aa10.81□□□□□ -0.68
PTCH1-213ENST00000546820 IGHG4P01861 327 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms