RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 WDR61Q9GZS3 305 aaKnown RBP11.74□□□□□ -0.53
VPS33A-209ENST00000544349 HIPK2Q9H2X6 1198 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 GAL3ST2Q9H3Q3 398 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 GNG13Q9P2W3 67 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 GAB2Q9UQC2 676 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 FAM208BQ5VWN6 2430 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 TET2Q6N021 2002 aaPredicted RBP11.74□□□□□ -0.53
VPS33A-209ENST00000544349 LY6HO94772 140 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 HSPB1P04792 205 aaKnown RBP11.74□□□□□ -0.53
VPS33A-209ENST00000544349 MRPS11P82912 194 aaKnown RBP11.74□□□□□ -0.53
VPS33A-209ENST00000544349 SPINK9Q5DT21 86 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 PRAMEF5Q5TYX0 476 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 TMEM14EPQ6UXP3 125 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 ZNF439Q8NDP4 499 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 SCGB1C1Q8TD33 95 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 ZDHHC16Q969W1 377 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 RBMXL1Q96E39 390 aaKnown RBP11.74□□□□□ -0.53
VPS33A-209ENST00000544349 ZNF714Q96N38 554 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 HSPB7Q9UBY9 170 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 RPUSD1Q9UJJ7 312 aaKnown RBP11.74□□□□□ -0.53
VPS33A-209ENST00000544349 IGSF10Q6WRI0 2623 aa11.74□□□□□ -0.53
VPS33A-209ENST00000544349 TRAV1-1A0A0B4J248 108 aa11.73□□□□□ -0.53
VPS33A-209ENST00000544349 ZFP92A6NM28 416 aa11.73□□□□□ -0.53
VPS33A-209ENST00000544349 A6NNC1 897 aa11.73□□□□□ -0.53
VPS33A-209ENST00000544349 IGKV1D-33P01593 117 aa11.73□□□□□ -0.53
VPS33A-209ENST00000544349 IGKV1-33P01594 117 aa11.73□□□□□ -0.53
VPS33A-209ENST00000544349 HBE1P02100 147 aa11.73□□□□□ -0.53
VPS33A-209ENST00000544349 CCL3L1P16619 93 aa11.73□□□□□ -0.53
VPS33A-209ENST00000544349 DUTP33316 252 aaKnown RBP11.73□□□□□ -0.53
VPS33A-209ENST00000544349 HBG1P69891 147 aa11.73□□□□□ -0.53
VPS33A-209ENST00000544349 HBG2P69892 147 aa11.73□□□□□ -0.53
VPS33A-209ENST00000544349 RNF212Q495C1 297 aa11.73□□□□□ -0.53
VPS33A-209ENST00000544349 ZNF787Q6DD87 383 aa11.73□□□□□ -0.53
VPS33A-209ENST00000544349 ZNF429Q86V71 674 aa11.73□□□□□ -0.53
VPS33A-209ENST00000544349 ZNF843Q8N446 348 aa11.73□□□□□ -0.53
VPS33A-209ENST00000544349 PSMG3Q9BT73 122 aaPredicted RBP11.73□□□□□ -0.53
VPS33A-209ENST00000544349 UBTD1Q9HAC8 227 aa11.73□□□□□ -0.53
VPS33A-209ENST00000544349 FAM90A26D6RGX4 464 aa11.72□□□□□ -0.53
VPS33A-209ENST00000544349 ERVFRD-1P60508 538 aa11.72□□□□□ -0.53
VPS33A-209ENST00000544349 RAB2AP61019 212 aa11.72□□□□□ -0.53
VPS33A-209ENST00000544349 ZNF343Q6P1L6 599 aa11.72□□□□□ -0.53
VPS33A-209ENST00000544349 HEPN1Q6WQI6 88 aa11.72□□□□□ -0.53
VPS33A-209ENST00000544349 C12orf57Q99622 126 aa11.72□□□□□ -0.53
VPS33A-209ENST00000544349 OR2C1O95371 312 aa11.72□□□□□ -0.53
VPS33A-209ENST00000544349 OR2B8PP59922 312 aa11.72□□□□□ -0.53
VPS33A-209ENST00000544349 DLK1P80370 383 aa11.72□□□□□ -0.53
VPS33A-209ENST00000544349 RPL39P5Q59GN2 51 aa11.72□□□□□ -0.53
VPS33A-209ENST00000544349 FAM90A2PQ658T7 463 aa11.72□□□□□ -0.53
VPS33A-209ENST00000544349 ZNF841Q6ZN19 808 aa11.72□□□□□ -0.53
VPS33A-209ENST00000544349 RALYQ9UKM9 306 aaKnown RBP11.72□□□□□ -0.53
VPS33A-209ENST00000544349 C5orf52A6NGY3 159 aa11.71□□□□□ -0.53
VPS33A-209ENST00000544349 M0R1X1 148 aa11.71□□□□□ -0.53
VPS33A-209ENST00000544349 BCL2P10415 239 aa11.71□□□□□ -0.53
VPS33A-209ENST00000544349 KHDC3LQ587J8 217 aa11.71□□□□□ -0.53
VPS33A-209ENST00000544349 NCR3LG1Q68D85 454 aa11.71□□□□□ -0.53
VPS33A-209ENST00000544349 C1orf229Q6ZS94 237 aaPredicted RBP11.71□□□□□ -0.53
VPS33A-209ENST00000544349 TAF15Q92804 592 aaKnown RBP eCLIP11.71□□□□□ -0.53
VPS33A-209ENST00000544349 RAB29O14966 203 aa11.71□□□□□ -0.54
VPS33A-209ENST00000544349 OR8U8P0C7N1 319 aa11.71□□□□□ -0.54
VPS33A-209ENST00000544349 TAGLN2P37802 199 aaKnown RBP11.71□□□□□ -0.54
VPS33A-209ENST00000544349 GNG10P50151 68 aa11.71□□□□□ -0.54
VPS33A-209ENST00000544349 TMEM41BQ5BJD5 291 aa11.71□□□□□ -0.54
VPS33A-209ENST00000544349 ACSM6Q6P461 480 aa11.71□□□□□ -0.54
VPS33A-209ENST00000544349 RBMS3Q6XE24 437 aaKnown RBP11.71□□□□□ -0.54
VPS33A-209ENST00000544349 SLC25A48Q6ZT89 311 aaKnown RBP11.71□□□□□ -0.54
VPS33A-209ENST00000544349 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.71□□□□□ -0.54
VPS33A-209ENST00000544349 MBD3L1Q8WWY6 194 aa11.71□□□□□ -0.54
VPS33A-209ENST00000544349 SAA2-SAA4A0A096LPE2 208 aa11.7□□□□□ -0.54
VPS33A-209ENST00000544349 TRBV23-1A0A0A0MS06 115 aa11.7□□□□□ -0.54
VPS33A-209ENST00000544349 PMS2P5A8MQ11 134 aa11.7□□□□□ -0.54
VPS33A-209ENST00000544349 IFNA4P05014 189 aa11.7□□□□□ -0.54
VPS33A-209ENST00000544349 RNF224P0DH78 156 aa11.7□□□□□ -0.54
VPS33A-209ENST00000544349 SAA2P0DJI9 122 aaPredicted RBP11.7□□□□□ -0.54
VPS33A-209ENST00000544349 CDKN1AP38936 164 aa11.7□□□□□ -0.54
VPS33A-209ENST00000544349 DLX6P56179 175 aa11.7□□□□□ -0.54
VPS33A-209ENST00000544349 RAB11AP62491 216 aa11.7□□□□□ -0.54
VPS33A-209ENST00000544349 TMEM155Q4W5P6 130 aa11.7□□□□□ -0.54
VPS33A-209ENST00000544349 LYG1Q8N1E2 194 aa11.7□□□□□ -0.54
VPS33A-209ENST00000544349 RAB1CQ92928 201 aa11.7□□□□□ -0.54
VPS33A-209ENST00000544349 TIMD4Q96H15 378 aa11.7□□□□□ -0.54
VPS33A-209ENST00000544349 ZNF251Q9BRH9 671 aa11.7□□□□□ -0.54
VPS33A-209ENST00000544349 UNKLQ9H9P5 680 aaKnown RBP11.7□□□□□ -0.54
VPS33A-209ENST00000544349 MAP1LC3B2A6NCE7 125 aa11.69□□□□□ -0.54
VPS33A-209ENST00000544349 MAS1LP35410 378 aa11.69□□□□□ -0.54
VPS33A-209ENST00000544349 DTD1Q8TEA8 209 aa11.69□□□□□ -0.54
VPS33A-209ENST00000544349 Q8WTZ3 238 aa11.69□□□□□ -0.54
VPS33A-209ENST00000544349 MALSU1Q96EH3 234 aa11.69□□□□□ -0.54
VPS33A-209ENST00000544349 TVP23CQ96ET8 276 aa11.69□□□□□ -0.54
VPS33A-209ENST00000544349 PARD6GQ9BYG4 376 aaPredicted RBP11.69□□□□□ -0.54
VPS33A-209ENST00000544349 MAP1LC3BQ9GZQ8 125 aa11.69□□□□□ -0.54
VPS33A-209ENST00000544349 CHODLQ9H9P2 273 aa11.69□□□□□ -0.54
VPS33A-209ENST00000544349 MIOXQ9UGB7 285 aa11.69□□□□□ -0.54
VPS33A-209ENST00000544349 UBE2CO00762 179 aa11.69□□□□□ -0.54
VPS33A-209ENST00000544349 CXCL1P09341 107 aa11.69□□□□□ -0.54
VPS33A-209ENST00000544349 NIPSNAP3BQ9BS92 247 aa11.69□□□□□ -0.54
VPS33A-209ENST00000544349 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.69□□□□□ -0.54
VPS33A-209ENST00000544349 MARCH11A6NNE9 402 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 HMGB3O15347 200 aaKnown RBP11.68□□□□□ -0.54
VPS33A-209ENST00000544349 FCGR3BO75015 233 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 GOSR1O95249 250 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms