RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 IGHV1-8P0DP01 117 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 FGF7P21781 194 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 NPBWR1P48145 328 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 SPCS3P61009 180 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 LCN15Q6UWW0 184 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 ZNF841Q6ZN19 808 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 ZNF833PQ6ZTB9 187 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 FAM216AQ8WUB2 273 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 ITLN2Q8WWU7 325 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-216ENST00000541410 CBLN4Q9NTU7 201 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 SMCO3A2RU48 225 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 C15orf61A6NNL5 157 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 FBP1P09467 338 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 OR13C7P0DN81 318 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 CEBPGP53567 150 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 ZNF726P1Q15940 193 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 RTL8BQ17RB0 113 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 ADTRPQ96IZ2 230 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 RAB1BQ9H0U4 201 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 ZFYVE26Q68DK2 2539 aa11.82□□□□□ -0.52
CLIP1-216ENST00000541410 NDUFA2O43678 99 aa11.82□□□□□ -0.52
CLIP1-216ENST00000541410 PPOXP50336 477 aa11.82□□□□□ -0.52
CLIP1-216ENST00000541410 RAB2AP61019 212 aa11.82□□□□□ -0.52
CLIP1-216ENST00000541410 ETV3LQ6ZN32 361 aa11.82□□□□□ -0.52
CLIP1-216ENST00000541410 SVBPQ8N300 66 aa11.82□□□□□ -0.52
CLIP1-216ENST00000541410 TMEM170AQ8WVE7 144 aa11.82□□□□□ -0.52
CLIP1-216ENST00000541410 SEC11CQ9BY50 192 aa11.82□□□□□ -0.52
CLIP1-216ENST00000541410 NAV3Q8IVL0 2385 aa11.82□□□□□ -0.52
CLIP1-216ENST00000541410 IGKV1D-33P01593 117 aa11.82□□□□□ -0.52
CLIP1-216ENST00000541410 IGKV1-33P01594 117 aa11.82□□□□□ -0.52
CLIP1-216ENST00000541410 SAA1P0DJI8 122 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-216ENST00000541410 VDAC2P45880 294 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-216ENST00000541410 HARBI1Q96MB7 349 aa11.82□□□□□ -0.52
CLIP1-216ENST00000541410 AIFM2Q9BRQ8 373 aa11.82□□□□□ -0.52
CLIP1-216ENST00000541410 TMEM147Q9BVK8 224 aa11.82□□□□□ -0.52
CLIP1-216ENST00000541410 HIPK2Q9H2X6 1198 aa11.82□□□□□ -0.52
CLIP1-216ENST00000541410 H0YJW9 148 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 HRASP01112 189 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 OR8U8P0C7N1 319 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 COX7A1P24310 79 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 AKR1C3P42330 323 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 C10orf91Q5T1B1 145 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 C11orf71Q6IPW1 123 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 ACSM6Q6P461 480 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 CBLN2Q8IUK8 224 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 OR10A7Q8NGE5 316 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 CLCC1Q96S66 551 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 UBTD1Q9HAC8 227 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 CARHSP1Q9Y2V2 147 aaKnown RBP11.81□□□□□ -0.52
CLIP1-216ENST00000541410 OR51B2Q9Y5P1 312 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 DNASE2O00115 360 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-216ENST00000541410 IFNA4P05014 189 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 TMEM30BQ3MIR4 351 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 C4orf17Q53FE4 359 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 IGFBPL1Q8WX77 278 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 PINX1Q96BK5 328 aaKnown RBP11.81□□□□□ -0.52
CLIP1-216ENST00000541410 RITA1Q96K30 269 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 C20orf24Q9BUV8 137 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 TMEM14BQ9NUH8 114 aa11.81□□□□□ -0.52
CLIP1-216ENST00000541410 PPIAL4CA0A0B4J2A2 164 aa11.8□□□□□ -0.52
CLIP1-216ENST00000541410 FAM90A9PA6NNJ1 464 aa11.8□□□□□ -0.52
CLIP1-216ENST00000541410 ARG1P05089 322 aa11.8□□□□□ -0.52
CLIP1-216ENST00000541410 PPIAL4GP0DN37 164 aa11.8□□□□□ -0.52
CLIP1-216ENST00000541410 TLE4Q04727 773 aa11.8□□□□□ -0.52
CLIP1-216ENST00000541410 PEA15Q15121 130 aa11.8□□□□□ -0.52
CLIP1-216ENST00000541410 AARDQ4LEZ3 155 aa11.8□□□□□ -0.52
CLIP1-216ENST00000541410 RCC1LQ96I51 464 aaKnown RBP11.8□□□□□ -0.52
CLIP1-216ENST00000541410 RBFOX3A6NFN3 312 aa11.79□□□□□ -0.52
CLIP1-216ENST00000541410 APOA2P02652 100 aa11.79□□□□□ -0.52
CLIP1-216ENST00000541410 PAX6P26367 422 aa11.79□□□□□ -0.52
CLIP1-216ENST00000541410 HSPE1P61604 102 aaKnown RBP11.79□□□□□ -0.52
CLIP1-216ENST00000541410 ZNF429Q86V71 674 aa11.79□□□□□ -0.52
CLIP1-216ENST00000541410 OR10W1Q8NGF6 305 aa11.79□□□□□ -0.52
CLIP1-216ENST00000541410 OR9G1Q8NH87 305 aa11.79□□□□□ -0.52
CLIP1-216ENST00000541410 NPCDR1Q9BY65 106 aa11.79□□□□□ -0.52
CLIP1-216ENST00000541410 TMEM133Q9H2Q1 129 aa11.79□□□□□ -0.52
CLIP1-216ENST00000541410 ONECUT1Q9UBC0 465 aa11.79□□□□□ -0.52
CLIP1-216ENST00000541410 ZFP92A6NM28 416 aa11.79□□□□□ -0.52
CLIP1-216ENST00000541410 ENSAO43768 121 aaKnown RBP11.79□□□□□ -0.52
CLIP1-216ENST00000541410 GNB2P62879 340 aa11.79□□□□□ -0.52
CLIP1-216ENST00000541410 WDR25Q64LD2 544 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-216ENST00000541410 RPP25LQ8N5L8 163 aaKnown RBP11.79□□□□□ -0.52
CLIP1-216ENST00000541410 RXFP4Q8TDU9 374 aa11.79□□□□□ -0.52
CLIP1-216ENST00000541410 FAM122AQ96E09 287 aa11.79□□□□□ -0.52
CLIP1-216ENST00000541410 NABP2Q9BQ15 211 aa11.79□□□□□ -0.52
CLIP1-216ENST00000541410 PSMG3Q9BT73 122 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-216ENST00000541410 SLC25A22Q9H936 323 aa11.79□□□□□ -0.52
CLIP1-216ENST00000541410 GNG13Q9P2W3 67 aa11.79□□□□□ -0.52
CLIP1-216ENST00000541410 FOXA2Q9Y261 457 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-216ENST00000541410 IGHV2-26A0A0B4J1V2 119 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 C22orf46C9J442 243 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 E7EUB6 86 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 UPK2O00526 184 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 CD1BP29016 333 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 GCSAMLQ5JQS6 135 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 TGIF2LXQ8IUE1 241 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 COMMD1Q8N668 190 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 OR8B3Q8NGG8 313 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 OR5AN1Q8NGI8 311 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 OR52E5Q8NH55 327 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms