RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 OR2C3Q8N628 320 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 OR52E5Q8NH55 327 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 MAGT1Q9H0U3 335 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 LYRM2Q9NU23 88 aaPredicted RBP17.14■□□□□ 0.33
VPS28-212ENST00000530836 MINOS1-NBL1R4GNA1 71 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 OOSP1A8MZH6 123 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 SHOXO15266 292 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 MSMBP08118 114 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 DLX1P56177 255 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 UBE2KP61086 200 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 DIAPH2-AS1Q14236 149 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 HCP5Q6MZN7 132 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 TEX261Q6UWH6 196 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 ZNF429Q86V71 674 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 U3KQ87 197 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 TLN2Q9Y4G6 2542 aa17.14■□□□□ 0.33
VPS28-212ENST00000530836 IGHV1-3A0A0C4DH29 117 aa17.13■□□□□ 0.33
VPS28-212ENST00000530836 MSGN1A6NI15 193 aa17.13■□□□□ 0.33
VPS28-212ENST00000530836 HOXB4P17483 251 aaPredicted RBP17.13■□□□□ 0.33
VPS28-212ENST00000530836 LGALS7P47929 136 aa17.13■□□□□ 0.33
VPS28-212ENST00000530836 TPTE2P1Q5T6R2 138 aa17.13■□□□□ 0.33
VPS28-212ENST00000530836 OR4A47Q6IF82 309 aa17.13■□□□□ 0.33
VPS28-212ENST00000530836 SSX9Q7RTT3 188 aa17.13■□□□□ 0.33
VPS28-212ENST00000530836 OR8H3Q8N146 312 aa17.13■□□□□ 0.33
VPS28-212ENST00000530836 OR8H1Q8NGG4 311 aa17.13■□□□□ 0.33
VPS28-212ENST00000530836 VSTM2AQ8TAG5 236 aa17.13■□□□□ 0.33
VPS28-212ENST00000530836 SMIM8Q96KF7 97 aa17.13■□□□□ 0.33
VPS28-212ENST00000530836 CIB3Q96Q77 187 aaPredicted RBP17.13■□□□□ 0.33
VPS28-212ENST00000530836 LPAR2Q9HBW0 351 aa17.13■□□□□ 0.33
VPS28-212ENST00000530836 BET1LQ9NYM9 111 aa17.13■□□□□ 0.33
VPS28-212ENST00000530836 IFNA7P01567 189 aa17.12■□□□□ 0.33
VPS28-212ENST00000530836 OR9G9P0C7N8 305 aa17.12■□□□□ 0.33
VPS28-212ENST00000530836 UBE2E1P51965 193 aa17.12■□□□□ 0.33
VPS28-212ENST00000530836 UBA52P62987 128 aaKnown RBP17.12■□□□□ 0.33
VPS28-212ENST00000530836 RELBQ01201 579 aa17.12■□□□□ 0.33
VPS28-212ENST00000530836 PDLIM3Q53GG5 364 aaPredicted RBP17.12■□□□□ 0.33
VPS28-212ENST00000530836 HARBI1Q96MB7 349 aa17.12■□□□□ 0.33
VPS28-212ENST00000530836 PAIP2BQ9ULR5 123 aaKnown RBP17.12■□□□□ 0.33
VPS28-212ENST00000530836 TBL2Q9Y4P3 447 aaKnown RBP17.12■□□□□ 0.33
VPS28-212ENST00000530836 TEP1Q99973 2627 aaKnown RBP17.12■□□□□ 0.33
VPS28-212ENST00000530836 MTORP42345 2549 aa17.12■□□□□ 0.33
VPS28-212ENST00000530836 KCNAB3O43448 404 aa17.11■□□□□ 0.33
VPS28-212ENST00000530836 NXPH3O95157 252 aa17.11■□□□□ 0.33
VPS28-212ENST00000530836 IL6RP08887 468 aaPredicted RBP17.11■□□□□ 0.33
VPS28-212ENST00000530836 CAV2P51636 162 aa17.11■□□□□ 0.33
VPS28-212ENST00000530836 LGALS4P56470 323 aa17.11■□□□□ 0.33
VPS28-212ENST00000530836 EIF5AP63241 154 aaKnown RBP17.11■□□□□ 0.33
VPS28-212ENST00000530836 PAX8Q06710 450 aa17.11■□□□□ 0.33
VPS28-212ENST00000530836 BAXQ07812 192 aa17.11■□□□□ 0.33
VPS28-212ENST00000530836 CCDC144NLQ6NUI1 221 aa17.11■□□□□ 0.33
VPS28-212ENST00000530836 VKORC1L1Q8N0U8 176 aa17.11■□□□□ 0.33
VPS28-212ENST00000530836 OR4A5Q8NH83 315 aa17.11■□□□□ 0.33
VPS28-212ENST00000530836 RNF5Q99942 180 aa17.11■□□□□ 0.33
VPS28-212ENST00000530836 FKBP11Q9NYL4 201 aa17.11■□□□□ 0.33
VPS28-212ENST00000530836 PRNDQ9UKY0 176 aa17.11■□□□□ 0.33
VPS28-212ENST00000530836 RNASEK-C17orf49H0YIS7 233 aa17.1■□□□□ 0.33
VPS28-212ENST00000530836 FGF2P09038 288 aa17.1■□□□□ 0.33
VPS28-212ENST00000530836 SPCS3P61009 180 aa17.1■□□□□ 0.33
VPS28-212ENST00000530836 RPS16P62249 146 aaKnown RBP17.1■□□□□ 0.33
VPS28-212ENST00000530836 TBX15Q96SF7 602 aa17.1■□□□□ 0.33
VPS28-212ENST00000530836 MS4A7Q9GZW8 240 aaPredicted RBP17.1■□□□□ 0.33
VPS28-212ENST00000530836 HIF1ANQ9NWT6 349 aa17.1■□□□□ 0.33
VPS28-212ENST00000530836 FOXA2Q9Y261 457 aaPredicted RBP17.1■□□□□ 0.33
VPS28-212ENST00000530836 TRAV20A0A0B4J274 112 aa17.1■□□□□ 0.33
VPS28-212ENST00000530836 C15orf61A6NNL5 157 aa17.1■□□□□ 0.33
VPS28-212ENST00000530836 GATA3P23771 443 aa17.1■□□□□ 0.33
VPS28-212ENST00000530836 PRB3Q04118 309 aaPredicted RBP17.1■□□□□ 0.33
VPS28-212ENST00000530836 KLRD1Q13241 179 aa17.1■□□□□ 0.33
VPS28-212ENST00000530836 MOB3BQ86TA1 216 aa17.1■□□□□ 0.33
VPS28-212ENST00000530836 PUSL1Q8N0Z8 303 aaKnown RBP17.1■□□□□ 0.33
VPS28-212ENST00000530836 ZNF680Q8NEM1 530 aa17.1■□□□□ 0.33
VPS28-212ENST00000530836 ZNF471Q9BX82 626 aaPredicted RBP17.1■□□□□ 0.33
VPS28-212ENST00000530836 RBKSQ9H477 322 aa17.1■□□□□ 0.33
VPS28-212ENST00000530836 YAE1D1Q9NRH1 226 aa17.1■□□□□ 0.33
VPS28-212ENST00000530836 TMEM14BQ9NUH8 114 aa17.1■□□□□ 0.33
VPS28-212ENST00000530836 ZNF257Q9Y2Q1 563 aa17.1■□□□□ 0.33
VPS28-212ENST00000530836 ABCA2Q9BZC7 2435 aa17.1■□□□□ 0.33
VPS28-212ENST00000530836 UPK2O00526 184 aa17.09■□□□□ 0.33
VPS28-212ENST00000530836 IFNA17P01571 189 aa17.09■□□□□ 0.33
VPS28-212ENST00000530836 PAX9P55771 341 aa17.09■□□□□ 0.33
VPS28-212ENST00000530836 Q71RC1 249 aaPredicted RBP17.09■□□□□ 0.33
VPS28-212ENST00000530836 TMEM252Q8N6L7 170 aa17.09■□□□□ 0.33
VPS28-212ENST00000530836 STOML3Q8TAV4 291 aa17.09■□□□□ 0.33
VPS28-212ENST00000530836 QTRT1Q9BXR0 403 aaKnown RBP17.09■□□□□ 0.33
VPS28-212ENST00000530836 PSENENQ9NZ42 101 aa17.09■□□□□ 0.33
VPS28-212ENST00000530836 ARHGAP32A7KAX9 2087 aa17.08■□□□□ 0.32
VPS28-212ENST00000530836 A0A1W2PPI3 338 aa17.08■□□□□ 0.32
VPS28-212ENST00000530836 SRRM4A7MD48 611 aaKnown RBP17.08■□□□□ 0.32
VPS28-212ENST00000530836 SCAF4O95104 1147 aaKnown RBP17.08■□□□□ 0.32
VPS28-212ENST00000530836 TMEM50AO95807 157 aa17.08■□□□□ 0.32
VPS28-212ENST00000530836 SAA1P0DJI8 122 aaPredicted RBP17.08■□□□□ 0.32
VPS28-212ENST00000530836 CD1BP29016 333 aa17.08■□□□□ 0.32
VPS28-212ENST00000530836 EWSR1Q01844 656 aaKnown RBP eCLIP17.08■□□□□ 0.32
VPS28-212ENST00000530836 VMA21Q3ZAQ7 101 aa17.08■□□□□ 0.32
VPS28-212ENST00000530836 STX12Q86Y82 276 aa17.08■□□□□ 0.32
VPS28-212ENST00000530836 DTD1Q8TEA8 209 aa17.08■□□□□ 0.32
VPS28-212ENST00000530836 PHYHIPLQ96FC7 376 aa17.08■□□□□ 0.32
VPS28-212ENST00000530836 CLCC1Q96S66 551 aa17.08■□□□□ 0.32
VPS28-212ENST00000530836 NUP50Q9UKX7 468 aa17.08■□□□□ 0.32
VPS28-212ENST00000530836 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.08■□□□□ 0.323e-7■■■■□ 19.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms