RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 VSTM2AQ8TAG5 236 aa11.04□□□□□ -0.64
USF1-209ENST00000529476 TSC22D3Q99576 134 aa11.04□□□□□ -0.64
USF1-209ENST00000529476 AIFM2Q9BRQ8 373 aa11.04□□□□□ -0.64
USF1-209ENST00000529476 WNT10AQ9GZT5 417 aa11.04□□□□□ -0.64
USF1-209ENST00000529476 ZNF430Q9H8G1 570 aaPredicted RBP11.04□□□□□ -0.64
USF1-209ENST00000529476 PARP11Q9NR21 331 aa11.04□□□□□ -0.64
USF1-209ENST00000529476 TMEM140Q9NV12 185 aa11.04□□□□□ -0.64
USF1-209ENST00000529476 FBXO7Q9Y3I1 522 aa11.04□□□□□ -0.64
USF1-209ENST00000529476 TRAV3A0A0B4J244 114 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 AP4M1O00189 453 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 UCP1P25874 307 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 SLC6A1P30531 599 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 ERVK-16P61578 105 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 SRSF4Q08170 494 aaKnown RBP11.03□□□□□ -0.64
USF1-209ENST00000529476 FXYD3Q14802 87 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 TNXAQ16473 311 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 TRIM16LQ309B1 348 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 MZT2BQ6NZ67 158 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 C10orf99Q6UWK7 81 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 ZNF562Q6V9R5 426 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 STPG2Q8N412 459 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 TMEM167AQ8TBQ9 72 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 ABHD5Q8WTS1 349 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 GLYATL2Q8WU03 294 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 WFDC12Q8WWY7 111 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 FAM103A1Q9BTL3 118 aaKnown RBP11.03□□□□□ -0.64
USF1-209ENST00000529476 TMEM222Q9H0R3 208 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 BET1LQ9NYM9 111 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 PRR13Q9NZ81 148 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 TENM1Q9UKZ4 2725 aa11.03□□□□□ -0.64
USF1-209ENST00000529476 MGAM2Q2M2H8 2515 aa11.02□□□□□ -0.64
USF1-209ENST00000529476 B3GALNT1O75752 331 aa11.02□□□□□ -0.65
USF1-209ENST00000529476 CNIH1O95406 144 aa11.02□□□□□ -0.65
USF1-209ENST00000529476 TCRBP04435 133 aa11.02□□□□□ -0.65
USF1-209ENST00000529476 IGF1P05019 195 aa11.02□□□□□ -0.65
USF1-209ENST00000529476 IL6RP08887 468 aaPredicted RBP11.02□□□□□ -0.65
USF1-209ENST00000529476 EGR2P11161 476 aaPredicted RBP11.02□□□□□ -0.65
USF1-209ENST00000529476 TMEM128Q5BJH2 165 aa11.02□□□□□ -0.65
USF1-209ENST00000529476 CENPVQ7Z7K6 275 aaPredicted RBP11.02□□□□□ -0.65
USF1-209ENST00000529476 SLC25A42Q86VD7 318 aa11.02□□□□□ -0.65
USF1-209ENST00000529476 MMD2Q8IY49 270 aa11.02□□□□□ -0.65
USF1-209ENST00000529476 OR4A5Q8NH83 315 aa11.02□□□□□ -0.65
USF1-209ENST00000529476 GRPEL2Q8TAA5 225 aa11.02□□□□□ -0.65
USF1-209ENST00000529476 LHFPL5Q8TAF8 219 aa11.02□□□□□ -0.65
USF1-209ENST00000529476 WIPF2Q8TF74 440 aaPredicted RBP11.02□□□□□ -0.65
USF1-209ENST00000529476 ARPC1AQ92747 370 aa11.02□□□□□ -0.65
USF1-209ENST00000529476 GALNT14Q96FL9 552 aa11.02□□□□□ -0.65
USF1-209ENST00000529476 SEC22AQ96IW7 307 aa11.02□□□□□ -0.65
USF1-209ENST00000529476 KCNIP3Q9Y2W7 256 aa11.02□□□□□ -0.65
USF1-209ENST00000529476 WSB1Q9Y6I7 421 aa11.02□□□□□ -0.65
USF1-209ENST00000529476 FAM240BA0A1B0GVZ2 78 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 G3V318 75 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 UPK2O00526 184 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 CREBL2O60519 120 aaPredicted RBP11.01□□□□□ -0.65
USF1-209ENST00000529476 CDS2O95674 445 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 IGKV1-5P01602 117 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 OR9G9P0C7N8 305 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 MYOD1P15172 320 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 ANXA7P20073 488 aaKnown RBP11.01□□□□□ -0.65
USF1-209ENST00000529476 VAMP1P23763 118 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 DHODHQ02127 395 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 PPP1R1AQ13522 171 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 TMEM187Q14656 261 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 ECSCRQ19T08 205 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 PDLIM3Q53GG5 364 aaPredicted RBP11.01□□□□□ -0.65
USF1-209ENST00000529476 C10orf55Q5SWW7 151 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 ZNF329Q86UD4 541 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 C3orf56Q8N813 242 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 CHPT1Q8WUD6 406 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 C20orf85Q9H1P6 137 aa11.01□□□□□ -0.65
USF1-209ENST00000529476 TRAV6A0A075B6T7 132 aa11□□□□□ -0.65
USF1-209ENST00000529476 TRAV41A0A0B4J266 112 aa11□□□□□ -0.65
USF1-209ENST00000529476 PSMB11A5LHX3 300 aa11□□□□□ -0.65
USF1-209ENST00000529476 ACTL6BO94805 426 aa11□□□□□ -0.65
USF1-209ENST00000529476 RPL8P62917 257 aaKnown RBP11□□□□□ -0.65
USF1-209ENST00000529476 IZUMO4Q1ZYL8 232 aa11□□□□□ -0.65
USF1-209ENST00000529476 TMEM268Q5VZI3 342 aa11□□□□□ -0.65
USF1-209ENST00000529476 HIST2H2BDQ6DRA6 164 aa11□□□□□ -0.65
USF1-209ENST00000529476 H2BFWTQ7Z2G1 175 aa11□□□□□ -0.65
USF1-209ENST00000529476 ZNF695Q8IW36 515 aa11□□□□□ -0.65
USF1-209ENST00000529476 SELENOHQ8IZQ5 122 aaKnown RBP11□□□□□ -0.65
USF1-209ENST00000529476 C11orf44Q8N8P7 122 aa11□□□□□ -0.65
USF1-209ENST00000529476 OR5AU1Q8NGC0 362 aa11□□□□□ -0.65
USF1-209ENST00000529476 SGMS2Q8NHU3 365 aa11□□□□□ -0.65
USF1-209ENST00000529476 SRSF12Q8WXF0 261 aaKnown RBP11□□□□□ -0.65
USF1-209ENST00000529476 TMEM56Q96MV1 263 aa11□□□□□ -0.65
USF1-209ENST00000529476 ZNF747Q9BV97 191 aa11□□□□□ -0.65
USF1-209ENST00000529476 NUDT15Q9NV35 164 aa11□□□□□ -0.65
USF1-209ENST00000529476 ZNF580Q9UK33 172 aa11□□□□□ -0.65
USF1-209ENST00000529476 NSG2Q9Y328 171 aa11□□□□□ -0.65
USF1-209ENST00000529476 TMEM56-RWDD3S4R434 201 aa11□□□□□ -0.65
USF1-209ENST00000529476 TET2Q6N021 2002 aaPredicted RBP11□□□□□ -0.65
USF1-209ENST00000529476 MSGN1A6NI15 193 aa10.99□□□□□ -0.65
USF1-209ENST00000529476 SFT2D2O95562 160 aa10.99□□□□□ -0.65
USF1-209ENST00000529476 OPN1MWP04001 364 aa10.99□□□□□ -0.65
USF1-209ENST00000529476 P0C879 139 aa10.99□□□□□ -0.65
USF1-209ENST00000529476 OPN1MW2P0DN77 364 aa10.99□□□□□ -0.65
USF1-209ENST00000529476 OPN1MW3P0DN78 364 aa10.99□□□□□ -0.65
USF1-209ENST00000529476 ANXA3P12429 323 aa10.99□□□□□ -0.65
USF1-209ENST00000529476 HLA-GP17693 338 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms