RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 LTBRP36941 435 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 ZNF83P51522 516 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 RPS20P60866 119 aaKnown RBP8.06□□□□□ -1.12
SYNE1-230ENST00000495090 SLC35E4Q6ICL7 350 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 GUSBP11Q6P575 273 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 RASL11AQ6T310 242 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 APH1AQ96BI3 265 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 FAM103A1Q9BTL3 118 aaKnown RBP8.06□□□□□ -1.12
SYNE1-230ENST00000495090 METRNQ9UJH8 293 aa8.06□□□□□ -1.12
SYNE1-230ENST00000495090 LSM4Q9Y4Z0 139 aaKnown RBP8.06□□□□□ -1.12
SYNE1-230ENST00000495090 ZNF503-AS2A6NEH8 195 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 C12orf77C9JDV5 145 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 RBMXL2O75526 392 aaKnown RBP8.05□□□□□ -1.12
SYNE1-230ENST00000495090 IGHV3-9P01782 118 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 IGHEP01854 428 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 AMY1AP04745 511 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 RFPL3SP0C7P2 107 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 C3orf79P0CE67 100 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 WIPI1Q5MNZ9 446 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-230ENST00000495090 NIT1Q86X76 327 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 OR8I2Q8N0Y5 310 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 OR4P4Q8NGL7 312 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 OR2Y1Q8NGV0 311 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 NINJ1Q92982 152 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 SLC25A10Q9UBX3 287 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-230ENST00000495090 IGHV2OR16-5A0A0B4J2B6 119 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 IGHV2-70DA0A0C4DH43 119 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 LY6G6EA0A0G2JKS1 128 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 IGHV1-69-2A0A0G2JMI3 117 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 ISLRO14498 428 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 HNF1AP20823 631 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 CA6P23280 308 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 VDAC2P45880 294 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-230ENST00000495090 RPS16P62249 146 aaKnown RBP8.05□□□□□ -1.12
SYNE1-230ENST00000495090 PLGLB1Q02325 96 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 OR1C1Q15619 314 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 MAJINQ3KP22 176 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 MCEMP1Q8IX19 187 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 ZNF808Q8N4W9 903 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-230ENST00000495090 SCCPDHQ8NBX0 429 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 UBALD1Q8TB05 177 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 MRGPRDQ8TDS7 321 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 MS4A5Q9H3V2 200 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 HES4Q9HCC6 221 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 U3KQA8 63 aa8.05□□□□□ -1.12
SYNE1-230ENST00000495090 ASCC3Q8N3C0 2202 aaKnown RBP8.04□□□□□ -1.12
SYNE1-230ENST00000495090 ZNF407Q9C0G0 2248 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 TRGV8A0A0C4DH27 118 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 SMIM27A0A1W2PRY6 76 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 FNDC10F2Z333 226 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 BMPR1BO00238 502 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 HAND1O96004 215 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 CA2P00918 260 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 HBZP02008 142 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 PPBPP02775 128 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 GNG4P50150 75 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 SELENOVP59797 346 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 EFNB3Q15768 340 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 LCE2DQ5TA82 110 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-230ENST00000495090 MIC13Q5XKP0 118 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 STUMQ69YW2 141 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 WDR86Q86TI4 376 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 GCNT2Q8N0V5 402 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 WIPF2Q8TF74 440 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-230ENST00000495090 BORCS7Q96B45 105 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 RCHY1Q96PM5 261 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 GP6Q9HCN6 339 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 NPVFQ9HCQ7 196 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 OCIAD1Q9NX40 245 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 SZT2Q5T011 3432 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 GTF3C1Q12789 2109 aa8.04□□□□□ -1.12
SYNE1-230ENST00000495090 ARHGAP21Q5T5U3 1957 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 FRMD6-AS1P0C7T7 363 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 SRFP11831 508 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 PMCHP20382 165 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 GDF1P27539 372 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 RAB30Q15771 203 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 GABRA6Q16445 453 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 SPINK9Q5DT21 86 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 CENPWQ5EE01 88 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 OR52L2PQ8NGH6 319 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 TSKUQ8WUA8 353 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 ALKBH7Q9BT30 221 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-230ENST00000495090 TMEM167BQ9NRX6 74 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 IL19Q9UHD0 177 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 CHTOPQ9Y3Y2 248 aaKnown RBP8.03□□□□□ -1.12
SYNE1-230ENST00000495090 DOCK11Q5JSL3 2073 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 NCKAP5O14513 1909 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 CEP192Q8TEP8 1941 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 LOC105371242A0A075B767 164 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 TRAV9-2A0A087WT02 112 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 IGLC7A0M8Q6 106 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 HELTA6NFD8 242 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 LINC00473A8K010 186 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 AQP7O14520 342 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 GFRA3O60609 400 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 OR9G9P0C7N8 305 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 TNFSF4P23510 183 aa8.03□□□□□ -1.12
SYNE1-230ENST00000495090 SRIP30626 198 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms