RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	SRPX	P78539	464 aa		11.53	□□□□□ -0.56
BRCA1-223	ENST00000494123	TMEM95	Q3KNT9	176 aa		11.53	□□□□□ -0.56
BRCA1-223	ENST00000494123	TMEM268	Q5VZI3	342 aa		11.53	□□□□□ -0.56
BRCA1-223	ENST00000494123	H2BFWT	Q7Z2G1	175 aa		11.53	□□□□□ -0.56
BRCA1-223	ENST00000494123	MMD2	Q8IY49	270 aa		11.53	□□□□□ -0.56
BRCA1-223	ENST00000494123	OR4A5	Q8NH83	315 aa		11.53	□□□□□ -0.56
BRCA1-223	ENST00000494123	LINC01006	Q8NI28	216 aa		11.53	□□□□□ -0.56
BRCA1-223	ENST00000494123	TMEM167A	Q8TBQ9	72 aa		11.53	□□□□□ -0.56
BRCA1-223	ENST00000494123	CASTOR1	Q8WTX7	329 aa		11.53	□□□□□ -0.56
BRCA1-223	ENST00000494123	PARP11	Q9NR21	331 aa		11.53	□□□□□ -0.56
BRCA1-223	ENST00000494123	BET1L	Q9NYM9	111 aa		11.53	□□□□□ -0.56
BRCA1-223	ENST00000494123	IGHV7-81	A0A0B4J1V7	117 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123		A0A1B0GUS0	222 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	CLPSL1	A2RUU4	121 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	SFT2D2	O95562	160 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	CDS2	O95674	445 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	IGKV1-39	P01597	117 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	IGKV1D-39	P04432	117 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	OR4E1	P0C645	316 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	MDK	P21741	143 aa	Predicted RBP	11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	CX3CL1	P78423	397 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	PJVK	Q0ZLH3	352 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	TMEM187	Q14656	261 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	TNXA	Q16473	311 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	PRSS8	Q16651	343 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	PLET1	Q6UQ28	207 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	ZNF562	Q6V9R5	426 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	DUSP18	Q8NEJ0	188 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	RBPMS	Q93062	196 aa	Known RBP	11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	RRNAD1	Q96FB5	475 aa	Known RBP	11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	SEC22A	Q96IW7	307 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	OR51J1	Q9H342	316 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	ZNF430	Q9H8G1	570 aa	Predicted RBP	11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	PRR13	Q9NZ81	148 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	RNF114	Q9Y508	228 aa		11.52	□□□□□ -0.57
BRCA1-223	ENST00000494123	PIGBOS1	A0A0B4J2F0	54 aa		11.51	□□□□□ -0.57
BRCA1-223	ENST00000494123	C9orf170	A2RU37	121 aa		11.51	□□□□□ -0.57
BRCA1-223	ENST00000494123	TMEM89	A2RUT3	159 aa		11.51	□□□□□ -0.57
BRCA1-223	ENST00000494123	AP4M1	O00189	453 aa		11.51	□□□□□ -0.57
BRCA1-223	ENST00000494123	SNAPC5	O75971	98 aa		11.51	□□□□□ -0.57
BRCA1-223	ENST00000494123	RAB25	P57735	213 aa		11.51	□□□□□ -0.57
BRCA1-223	ENST00000494123	RPL8	P62917	257 aa	Known RBP	11.51	□□□□□ -0.57
BRCA1-223	ENST00000494123	FXYD3	Q14802	87 aa		11.51	□□□□□ -0.57
BRCA1-223	ENST00000494123	SELENOH	Q8IZQ5	122 aa	Known RBP	11.51	□□□□□ -0.57
BRCA1-223	ENST00000494123	LGI3	Q8N145	548 aa		11.51	□□□□□ -0.57
BRCA1-223	ENST00000494123	ARPC1A	Q92747	370 aa		11.51	□□□□□ -0.57
BRCA1-223	ENST00000494123	TMEM56	Q96MV1	263 aa		11.51	□□□□□ -0.57
BRCA1-223	ENST00000494123	TMEM56-RWDD3	S4R434	201 aa		11.51	□□□□□ -0.57
BRCA1-223	ENST00000494123	LINC01548	A6NM66	108 aa		11.5	□□□□□ -0.57
BRCA1-223	ENST00000494123	HAX1	O00165	279 aa		11.5	□□□□□ -0.57
BRCA1-223	ENST00000494123	ATP6V0E1	O15342	81 aa		11.5	□□□□□ -0.57
BRCA1-223	ENST00000494123	PTTG1	O95997	202 aa		11.5	□□□□□ -0.57
BRCA1-223	ENST00000494123	DHRS2	Q13268	280 aa		11.5	□□□□□ -0.57
BRCA1-223	ENST00000494123	LYG2	Q86SG7	212 aa		11.5	□□□□□ -0.57
BRCA1-223	ENST00000494123	GRPEL2	Q8TAA5	225 aa		11.5	□□□□□ -0.57
BRCA1-223	ENST00000494123	LHFPL5	Q8TAF8	219 aa		11.5	□□□□□ -0.57
BRCA1-223	ENST00000494123	IL22RA2	Q969J5	263 aa		11.5	□□□□□ -0.57
BRCA1-223	ENST00000494123	ALX4	Q9H161	411 aa	Predicted RBP	11.5	□□□□□ -0.57
BRCA1-223	ENST00000494123	SERTAD4	Q9NUC0	356 aa		11.5	□□□□□ -0.57
BRCA1-223	ENST00000494123	TRAV3	A0A0B4J244	114 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	UPK2	O00526	184 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	RBMXL2	O75526	392 aa	Known RBP	11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	IGKV1-5	P01602	117 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	HLA-G	P17693	338 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	MAS1L	P35410	378 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	SLC35G3	Q8N808	338 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	OR4A16	Q8NH70	328 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	CHPT1	Q8WUD6	406 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	NOL4L	Q96MY1	436 aa	Predicted RBP	11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	PHB2	Q99623	299 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	COMMD5	Q9GZQ3	224 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	LINC00527	Q9UJ94	153 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	MMP24	Q9Y5R2	645 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	INMT-MINDY4	F8WBC2	141 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	OR9G9	P0C7N8	305 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	COMP	P49747	757 aa	Predicted RBP	11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	NDP	Q00604	133 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	MRGPRG-AS1	Q2M3A8	158 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	RGS21	Q2M5E4	152 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	ANKRD55	Q3KP44	614 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	AWAT1	Q58HT5	328 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	CENPV	Q7Z7K6	275 aa	Predicted RBP	11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	FAM219A	Q8IW50	185 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	CADM3	Q8N126	398 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	STPG2	Q8N412	459 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	COQ8A	Q8NI60	647 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	FAM103A1	Q9BTL3	118 aa	Known RBP	11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	GON7	Q9BXV9	100 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	NSG2	Q9Y328	171 aa		11.49	□□□□□ -0.57
BRCA1-223	ENST00000494123	PLXNB1	O43157	2135 aa		11.48	□□□□□ -0.57
BRCA1-223	ENST00000494123		A0A0B4J2A0	478 aa		11.48	□□□□□ -0.57
BRCA1-223	ENST00000494123	DUS4L	O95620	317 aa	Known RBP	11.48	□□□□□ -0.57
BRCA1-223	ENST00000494123	IGF1	P05019	195 aa		11.48	□□□□□ -0.57
BRCA1-223	ENST00000494123	IL6R	P08887	468 aa	Predicted RBP	11.48	□□□□□ -0.57
BRCA1-223	ENST00000494123	VDAC1	P21796	283 aa		11.48	□□□□□ -0.57
BRCA1-223	ENST00000494123	MECP2	P51608	486 aa	Known RBP	11.48	□□□□□ -0.57
BRCA1-223	ENST00000494123	OR2B8P	P59922	312 aa		11.48	□□□□□ -0.57
BRCA1-223	ENST00000494123	TMEM267	Q0VDI3	215 aa	Predicted RBP	11.48	□□□□□ -0.57
BRCA1-223	ENST00000494123	ECSCR	Q19T08	205 aa		11.48	□□□□□ -0.57
BRCA1-223	ENST00000494123	KLHDC1	Q8N7A1	406 aa		11.48	□□□□□ -0.57

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