RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 SLC35B1P78383 322 aa15.73■□□□□ 0.11
SHROOM3-209ENST00000490690 SRSF2Q01130 221 aaKnown RBP15.73■□□□□ 0.11
SHROOM3-209ENST00000490690 DCTN2Q13561 401 aaKnown RBP15.73■□□□□ 0.11
SHROOM3-209ENST00000490690 PRSS8Q16651 343 aa15.73■□□□□ 0.11
SHROOM3-209ENST00000490690 THOC7Q6I9Y2 204 aaKnown RBP15.73■□□□□ 0.11
SHROOM3-209ENST00000490690 OR4A47Q6IF82 309 aa15.73■□□□□ 0.11
SHROOM3-209ENST00000490690 PLET1Q6UQ28 207 aa15.73■□□□□ 0.11
SHROOM3-209ENST00000490690 H2BFWTQ7Z2G1 175 aa15.73■□□□□ 0.11
SHROOM3-209ENST00000490690 LGI3Q8N145 548 aa15.73■□□□□ 0.11
SHROOM3-209ENST00000490690 ADAD2Q8NCV1 583 aaKnown RBP15.73■□□□□ 0.11
SHROOM3-209ENST00000490690 DUSP18Q8NEJ0 188 aa15.73■□□□□ 0.11
SHROOM3-209ENST00000490690 RNASE11Q8TAA1 199 aaKnown RBP15.73■□□□□ 0.11
SHROOM3-209ENST00000490690 TMEM230Q96A57 120 aa15.73■□□□□ 0.11
SHROOM3-209ENST00000490690 TMEM56Q96MV1 263 aa15.73■□□□□ 0.11
SHROOM3-209ENST00000490690 TMEM140Q9NV12 185 aa15.73■□□□□ 0.11
SHROOM3-209ENST00000490690 TMEM56-RWDD3S4R434 201 aa15.73■□□□□ 0.11
SHROOM3-209ENST00000490690 ARPC1BO15143 372 aaKnown RBP15.72■□□□□ 0.11
SHROOM3-209ENST00000490690 CA2P00918 260 aa15.72■□□□□ 0.11
SHROOM3-209ENST00000490690 KRASP01116 189 aa15.72■□□□□ 0.11
SHROOM3-209ENST00000490690 VDAC1P21796 283 aa15.72■□□□□ 0.11
SHROOM3-209ENST00000490690 RPL8P62917 257 aaKnown RBP15.72■□□□□ 0.11
SHROOM3-209ENST00000490690 SSX9Q7RTT3 188 aa15.72■□□□□ 0.11
SHROOM3-209ENST00000490690 COMMD1Q8N668 190 aa15.72■□□□□ 0.11
SHROOM3-209ENST00000490690 GLYATL2Q8WU03 294 aa15.72■□□□□ 0.11
SHROOM3-209ENST00000490690 ARPC1AQ92747 370 aa15.72■□□□□ 0.11
SHROOM3-209ENST00000490690 NUDT15Q9NV35 164 aa15.72■□□□□ 0.11
SHROOM3-209ENST00000490690 PRNDQ9UKY0 176 aa15.72■□□□□ 0.11
SHROOM3-209ENST00000490690 CUBNO60494 3623 aa15.72■□□□□ 0.11
SHROOM3-209ENST00000490690 IGHV7-81A0A0B4J1V7 117 aa15.71■□□□□ 0.11
SHROOM3-209ENST00000490690 SFT2D2O95562 160 aa15.71■□□□□ 0.11
SHROOM3-209ENST00000490690 PTTG1O95997 202 aa15.71■□□□□ 0.11
SHROOM3-209ENST00000490690 HLA-AP01891 365 aaKnown RBP15.71■□□□□ 0.11
SHROOM3-209ENST00000490690 H2AFB2P0C5Z0 115 aa15.71■□□□□ 0.11
SHROOM3-209ENST00000490690 CX3CL1P78423 397 aa15.71■□□□□ 0.11
SHROOM3-209ENST00000490690 IFITM3Q01628 133 aa15.71■□□□□ 0.11
SHROOM3-209ENST00000490690 C4orf46Q504U0 113 aa15.71■□□□□ 0.11
SHROOM3-209ENST00000490690 MRPL41Q8IXM3 137 aaKnown RBP15.71■□□□□ 0.11
SHROOM3-209ENST00000490690 COQ8AQ8NI60 647 aa15.71■□□□□ 0.11
SHROOM3-209ENST00000490690 ABHD5Q8WTS1 349 aa15.71■□□□□ 0.11
SHROOM3-209ENST00000490690 SEC22AQ96IW7 307 aa15.71■□□□□ 0.11
SHROOM3-209ENST00000490690 SPIN2AQ99865 258 aa15.71■□□□□ 0.11
SHROOM3-209ENST00000490690 SPIN2BQ9BPZ2 258 aa15.71■□□□□ 0.11
SHROOM3-209ENST00000490690 COMMD5Q9GZQ3 224 aa15.71■□□□□ 0.11
SHROOM3-209ENST00000490690 A0A0B4J2A0 478 aa15.7■□□□□ 0.1
SHROOM3-209ENST00000490690 OR4E1P0C645 316 aa15.7■□□□□ 0.1
SHROOM3-209ENST00000490690 G6PCP35575 357 aa15.7■□□□□ 0.1
SHROOM3-209ENST00000490690 MECP2P51608 486 aaKnown RBP15.7■□□□□ 0.1
SHROOM3-209ENST00000490690 TMEM187Q14656 261 aa15.7■□□□□ 0.1
SHROOM3-209ENST00000490690 FXYD3Q14802 87 aa15.7■□□□□ 0.1
SHROOM3-209ENST00000490690 TNXAQ16473 311 aa15.7■□□□□ 0.1
SHROOM3-209ENST00000490690 SP6Q3SY56 376 aa15.7■□□□□ 0.1
SHROOM3-209ENST00000490690 AWAT1Q58HT5 328 aa15.7■□□□□ 0.1
SHROOM3-209ENST00000490690 VKORC1L1Q8N0U8 176 aa15.7■□□□□ 0.1
SHROOM3-209ENST00000490690 LSM10Q969L4 123 aaKnown RBP15.7■□□□□ 0.1
SHROOM3-209ENST00000490690 CLCC1Q96S66 551 aa15.7■□□□□ 0.1
SHROOM3-209ENST00000490690 ZNF430Q9H8G1 570 aaPredicted RBP15.7■□□□□ 0.1
SHROOM3-209ENST00000490690 PARP11Q9NR21 331 aa15.7■□□□□ 0.1
SHROOM3-209ENST00000490690 SHPKQ9UHJ6 478 aa15.7■□□□□ 0.1
SHROOM3-209ENST00000490690 UPK2O00526 184 aa15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 PRAF2O60831 178 aa15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 HLA-GP17693 338 aa15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 MDKP21741 143 aaPredicted RBP15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 CRIP2P52943 208 aaPredicted RBP15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 GNB1P62873 340 aa15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 SUPT4H1P63272 117 aaKnown RBP15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 PPP1R1AQ13522 171 aa15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 TMEM268Q5VZI3 342 aa15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 C12orf54Q6X4T0 127 aa15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 HSD17B13Q7Z5P4 300 aaPredicted RBP15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 LYG2Q86SG7 212 aa15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 STPG2Q8N412 459 aa15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 LRTM2Q8N967 370 aa15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 OR5B3Q8NH48 314 aa15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 OR4A16Q8NH70 328 aa15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 SGMS2Q8NHU3 365 aa15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 SRSF8Q9BRL6 282 aaKnown RBP15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 GPN1Q9HCN4 374 aaPredicted RBP15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 SERTAD4Q9NUC0 356 aa15.69■□□□□ 0.1
SHROOM3-209ENST00000490690 RBMXL2O75526 392 aaKnown RBP15.68■□□□□ 0.1
SHROOM3-209ENST00000490690 DUS4LO95620 317 aaKnown RBP15.68■□□□□ 0.1
SHROOM3-209ENST00000490690 IL6RP08887 468 aaPredicted RBP15.68■□□□□ 0.1
SHROOM3-209ENST00000490690 AKIRIN2Q53H80 203 aa15.68■□□□□ 0.1
SHROOM3-209ENST00000490690 NRARPQ7Z6K4 114 aa15.68■□□□□ 0.1
SHROOM3-209ENST00000490690 CENPVQ7Z7K6 275 aaPredicted RBP15.68■□□□□ 0.1
SHROOM3-209ENST00000490690 OR4X2Q8NGF9 303 aa15.68■□□□□ 0.1
SHROOM3-209ENST00000490690 HSPB9Q9BQS6 159 aa15.68■□□□□ 0.1
SHROOM3-209ENST00000490690 PDCD10Q9BUL8 212 aa15.68■□□□□ 0.1
SHROOM3-209ENST00000490690 WNT10AQ9GZT5 417 aa15.68■□□□□ 0.1
SHROOM3-209ENST00000490690 TRAV6A0A075B6T7 132 aa15.67■□□□□ 0.1
SHROOM3-209ENST00000490690 C9orf170A2RU37 121 aa15.67■□□□□ 0.1
SHROOM3-209ENST00000490690 PSMB11A5LHX3 300 aa15.67■□□□□ 0.1
SHROOM3-209ENST00000490690 SH2D7A6NKC9 451 aaPredicted RBP15.67■□□□□ 0.1
SHROOM3-209ENST00000490690 ATP6V0E1O15342 81 aa15.67■□□□□ 0.1
SHROOM3-209ENST00000490690 DHFRP00374 187 aa15.67■□□□□ 0.1
SHROOM3-209ENST00000490690 RPL27AP46776 148 aaKnown RBP15.67■□□□□ 0.1
SHROOM3-209ENST00000490690 PROK1P58294 105 aa15.67■□□□□ 0.1
SHROOM3-209ENST00000490690 DHRS2Q13268 280 aa15.67■□□□□ 0.1
SHROOM3-209ENST00000490690 SELENOHQ8IZQ5 122 aaKnown RBP15.67■□□□□ 0.1
SHROOM3-209ENST00000490690 SRSF12Q8WXF0 261 aaKnown RBP15.67■□□□□ 0.1
SHROOM3-209ENST00000490690 PHB2Q99623 299 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms