RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 CHST1O43916 411 aa17.43■□□□□ 0.38
SMC4-221ENST00000489573 MED6O75586 246 aa17.43■□□□□ 0.38
SMC4-221ENST00000489573 IGLV2-23P01705 113 aa17.43■□□□□ 0.38
SMC4-221ENST00000489573 IGHV1-69P01742 117 aa17.43■□□□□ 0.38
SMC4-221ENST00000489573 IL6RP08887 468 aaPredicted RBP17.43■□□□□ 0.38
SMC4-221ENST00000489573 P2RY1P47900 373 aa17.43■□□□□ 0.38
SMC4-221ENST00000489573 TMUB2Q71RG4 321 aa17.43■□□□□ 0.38
SMC4-221ENST00000489573 DYNAPQ8N1N2 210 aa17.43■□□□□ 0.38
SMC4-221ENST00000489573 KCNRGQ8N5I3 272 aa17.43■□□□□ 0.38
SMC4-221ENST00000489573 WFDC11Q8NEX6 87 aa17.43■□□□□ 0.38
SMC4-221ENST00000489573 VSTM2AQ8TAG5 236 aa17.43■□□□□ 0.38
SMC4-221ENST00000489573 RAB40CQ96S21 281 aa17.43■□□□□ 0.38
SMC4-221ENST00000489573 MSGN1A6NI15 193 aa17.42■□□□□ 0.38
SMC4-221ENST00000489573 C15orf61A6NNL5 157 aa17.42■□□□□ 0.38
SMC4-221ENST00000489573 J3QLI3 93 aa17.42■□□□□ 0.38
SMC4-221ENST00000489573 UPK2O00526 184 aa17.42■□□□□ 0.38
SMC4-221ENST00000489573 VENTXO95231 258 aa17.42■□□□□ 0.38
SMC4-221ENST00000489573 TGFAP01135 160 aa17.42■□□□□ 0.38
SMC4-221ENST00000489573 S100A11P31949 105 aa17.42■□□□□ 0.38
SMC4-221ENST00000489573 VMA21Q3ZAQ7 101 aa17.42■□□□□ 0.38
SMC4-221ENST00000489573 ARL6Q9H0F7 186 aa17.42■□□□□ 0.38
SMC4-221ENST00000489573 RBKSQ9H477 322 aa17.42■□□□□ 0.38
SMC4-221ENST00000489573 CACFD1Q9UGQ2 172 aa17.42■□□□□ 0.38
SMC4-221ENST00000489573 NOTCH2Q04721 2471 aa17.42■□□□□ 0.38
SMC4-221ENST00000489573 APCP25054 2843 aa17.41■□□□□ 0.38
SMC4-221ENST00000489573 KBTBD11O94819 623 aa17.41■□□□□ 0.38
SMC4-221ENST00000489573 HKR1P10072 659 aa17.41■□□□□ 0.38
SMC4-221ENST00000489573 UBE2KP61086 200 aa17.41■□□□□ 0.38
SMC4-221ENST00000489573 OPCMLQ14982 345 aa17.41■□□□□ 0.38
SMC4-221ENST00000489573 GPR157Q5UAW9 335 aa17.41■□□□□ 0.38
SMC4-221ENST00000489573 ZNF429Q86V71 674 aa17.41■□□□□ 0.38
SMC4-221ENST00000489573 PIP4P2Q8N4L2 257 aa17.41■□□□□ 0.38
SMC4-221ENST00000489573 OR52E5Q8NH55 327 aa17.41■□□□□ 0.38
SMC4-221ENST00000489573 OR4A5Q8NH83 315 aa17.41■□□□□ 0.38
SMC4-221ENST00000489573 AJUBAQ96IF1 538 aa17.41■□□□□ 0.38
SMC4-221ENST00000489573 RITA1Q96K30 269 aa17.41■□□□□ 0.38
SMC4-221ENST00000489573 RNF5Q99942 180 aa17.41■□□□□ 0.38
SMC4-221ENST00000489573 PRNDQ9UKY0 176 aa17.41■□□□□ 0.38
SMC4-221ENST00000489573 FOXA2Q9Y261 457 aaPredicted RBP17.41■□□□□ 0.38
SMC4-221ENST00000489573 CSMD1Q96PZ7 3565 aa17.41■□□□□ 0.38
SMC4-221ENST00000489573 IGHV3OR16-10A0A075B7F0 116 aa17.4■□□□□ 0.38
SMC4-221ENST00000489573 PAX6P26367 422 aa17.4■□□□□ 0.38
SMC4-221ENST00000489573 RPL12P30050 165 aaKnown RBP17.4■□□□□ 0.38
SMC4-221ENST00000489573 TSNAXQ99598 290 aaKnown RBP17.4■□□□□ 0.38
SMC4-221ENST00000489573 TMEM14BQ9NUH8 114 aa17.4■□□□□ 0.38
SMC4-221ENST00000489573 GPR137BO60478 399 aa17.4■□□□□ 0.38
SMC4-221ENST00000489573 TSC22D2O75157 780 aa17.4■□□□□ 0.38
SMC4-221ENST00000489573 TMEM50AO95807 157 aa17.4■□□□□ 0.38
SMC4-221ENST00000489573 IFNA17P01571 189 aa17.4■□□□□ 0.38
SMC4-221ENST00000489573 IAPPP10997 89 aa17.4■□□□□ 0.38
SMC4-221ENST00000489573 SPCS3P61009 180 aa17.4■□□□□ 0.38
SMC4-221ENST00000489573 RUSC1-AS1Q66K80 236 aa17.4■□□□□ 0.38
SMC4-221ENST00000489573 OR2C3Q8N628 320 aa17.4■□□□□ 0.38
SMC4-221ENST00000489573 TMEM167AQ8TBQ9 72 aa17.4■□□□□ 0.38
SMC4-221ENST00000489573 ZC4H2Q9NQZ6 224 aa17.4■□□□□ 0.38
SMC4-221ENST00000489573 LYRM2Q9NU23 88 aaPredicted RBP17.4■□□□□ 0.38
SMC4-221ENST00000489573 CR1P17927 2039 aa17.39■□□□□ 0.37
SMC4-221ENST00000489573 IGKV1D-33P01593 117 aa17.39■□□□□ 0.37
SMC4-221ENST00000489573 IGKV1-33P01594 117 aa17.39■□□□□ 0.37
SMC4-221ENST00000489573 CAV2P51636 162 aa17.39■□□□□ 0.37
SMC4-221ENST00000489573 PAX9P55771 341 aa17.39■□□□□ 0.37
SMC4-221ENST00000489573 RPL23AP62750 156 aaKnown RBP17.39■□□□□ 0.37
SMC4-221ENST00000489573 PDLIM3Q53GG5 364 aaPredicted RBP17.39■□□□□ 0.37
SMC4-221ENST00000489573 NUP50Q9UKX7 468 aa17.39■□□□□ 0.37
SMC4-221ENST00000489573 WSB1Q9Y6I7 421 aa17.39■□□□□ 0.37
SMC4-221ENST00000489573 CEBPZOSA8MTT3 80 aa17.38■□□□□ 0.37
SMC4-221ENST00000489573 SLC25A17O43808 307 aa17.38■□□□□ 0.37
SMC4-221ENST00000489573 IGHV4-38-2P0DP08 117 aa17.38■□□□□ 0.37
SMC4-221ENST00000489573 TAS2R30P59541 319 aa17.38■□□□□ 0.37
SMC4-221ENST00000489573 TEX45Q8NA69 505 aa17.38■□□□□ 0.37
SMC4-221ENST00000489573 DTD1Q8TEA8 209 aa17.38■□□□□ 0.37
SMC4-221ENST00000489573 SMIM8Q96KF7 97 aa17.38■□□□□ 0.37
SMC4-221ENST00000489573 FKBP11Q9NYL4 201 aa17.38■□□□□ 0.37
SMC4-221ENST00000489573 KANTRA0A1W2PQU2 76 aa17.37■□□□□ 0.37
SMC4-221ENST00000489573 FAM24AA6NFZ4 105 aa17.37■□□□□ 0.37
SMC4-221ENST00000489573 BCL2L11O43521 198 aa17.37■□□□□ 0.37
SMC4-221ENST00000489573 MOSP00540 346 aa17.37■□□□□ 0.37
SMC4-221ENST00000489573 AVPP01185 164 aa17.37■□□□□ 0.37
SMC4-221ENST00000489573 SNRNP70P08621 437 aaKnown RBP17.37■□□□□ 0.37
SMC4-221ENST00000489573 HSPE1P61604 102 aaKnown RBP17.37■□□□□ 0.37
SMC4-221ENST00000489573 PSG5Q15238 335 aa17.37■□□□□ 0.37
SMC4-221ENST00000489573 CYB5R2Q6BCY4 276 aa17.37■□□□□ 0.37
SMC4-221ENST00000489573 OR2T10Q8NGZ9 312 aa17.37■□□□□ 0.37
SMC4-221ENST00000489573 ZDHHC16Q969W1 377 aa17.37■□□□□ 0.37
SMC4-221ENST00000489573 CIB3Q96Q77 187 aaPredicted RBP17.37■□□□□ 0.37
SMC4-221ENST00000489573 GON7Q9BXV9 100 aa17.37■□□□□ 0.37
SMC4-221ENST00000489573 PSENENQ9NZ42 101 aa17.37■□□□□ 0.37
SMC4-221ENST00000489573 TCF19Q9Y242 345 aa17.37■□□□□ 0.37
SMC4-221ENST00000489573 ZNF257Q9Y2Q1 563 aa17.37■□□□□ 0.37
SMC4-221ENST00000489573 OR51B2Q9Y5P1 312 aa17.37■□□□□ 0.37
SMC4-221ENST00000489573 CSMD2Q7Z408 3487 aa17.37■□□□□ 0.37
SMC4-221ENST00000489573 SPDEFO95238 335 aa17.36■□□□□ 0.37
SMC4-221ENST00000489573 CNTFRP26992 372 aa17.36■□□□□ 0.37
SMC4-221ENST00000489573 BRS3P32247 399 aa17.36■□□□□ 0.37
SMC4-221ENST00000489573 RPL8P62917 257 aaKnown RBP17.36■□□□□ 0.37
SMC4-221ENST00000489573 SPINK9Q5DT21 86 aa17.36■□□□□ 0.37
SMC4-221ENST00000489573 BRD3OSQ6XYD6 125 aa17.36■□□□□ 0.37
SMC4-221ENST00000489573 TMEM252Q8N6L7 170 aa17.36■□□□□ 0.37
SMC4-221ENST00000489573 EAF1Q96JC9 268 aaPredicted RBP17.36■□□□□ 0.37
SMC4-221ENST00000489573 ARPC5LQ9BPX5 153 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms