RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 KCNAB3O43448 404 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 TSPAN9O75954 239 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 SNAPC5O75971 98 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 CNIH1O95406 144 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 KRASP01116 189 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 IGLV2-23P01705 113 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 RAB25P57735 213 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 UBE2MP61081 183 aaKnown RBP8.17□□□□□ -1.1
SKA1-204ENST00000488454 SRPXP78539 464 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 DCTN2Q13561 401 aaKnown RBP8.17□□□□□ -1.1
SKA1-204ENST00000488454 C4orf46Q504U0 113 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 PLET1Q6UQ28 207 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 Q6ZSV7 163 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 SLC35E3Q7Z769 313 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 PPP1R27Q86WC6 154 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 FOXRED2Q8IWF2 684 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 VKORC1L1Q8N0U8 176 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 FAM71E2Q8N5Q1 922 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.17□□□□□ -1.1
SKA1-204ENST00000488454 OR4A5Q8NH83 315 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 RNASE11Q8TAA1 199 aaKnown RBP8.17□□□□□ -1.1
SKA1-204ENST00000488454 RRNAD1Q96FB5 475 aaKnown RBP8.17□□□□□ -1.1
SKA1-204ENST00000488454 GALNT14Q96FL9 552 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 TMEM222Q9H0R3 208 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 C20orf85Q9H1P6 137 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 C16orf95Q9H693 158 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 SIGLEC9Q9Y336 463 aa8.17□□□□□ -1.1
SKA1-204ENST00000488454 ZFHX3Q15911 3703 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 TRAV6A0A075B6T7 132 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 A0A1B0GUS0 222 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 MARCH11A6NNE9 402 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 SFT2D2O95562 160 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 HLA-DRB1P01911 266 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 AMY1AP04745 511 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 SAA1P0DJI8 122 aaPredicted RBP8.16□□□□□ -1.1
SKA1-204ENST00000488454 VSIG10L2P0DP72 767 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 ANXA7P20073 488 aaKnown RBP8.16□□□□□ -1.1
SKA1-204ENST00000488454 UCP1P25874 307 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 G6PCP35575 357 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 VDAC2P45880 294 aaPredicted RBP8.16□□□□□ -1.1
SKA1-204ENST00000488454 GNB1P62873 340 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 KRTAP24-1Q3LI83 254 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 ZNF562Q6V9R5 426 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 H2BFWTQ7Z2G1 175 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 NRARPQ7Z6K4 114 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 MMD2Q8IY49 270 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 LGI3Q8N145 548 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 Q8N2B8 174 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 DUSP18Q8NEJ0 188 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 ABHD5Q8WTS1 349 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 GLYATL2Q8WU03 294 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 TMEM230Q96A57 120 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 C19orf24Q9BVV8 132 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 SETD2Q9BYW2 2564 aaPredicted RBP8.16□□□□□ -1.1
SKA1-204ENST00000488454 ALX4Q9H161 411 aaPredicted RBP8.16□□□□□ -1.1
SKA1-204ENST00000488454 ZNF702PQ9H963 129 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 NUDT15Q9NV35 164 aa8.16□□□□□ -1.1
SKA1-204ENST00000488454 TMEM89A2RUT3 159 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 CLPSL1A2RUU4 121 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 FCN1O00602 326 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 RBMXL2O75526 392 aaKnown RBP8.15□□□□□ -1.1
SKA1-204ENST00000488454 KBTBD11O94819 623 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 CDS2O95674 445 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 CA2P00918 260 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 IGHG2P01859 326 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 HLA-AP01891 365 aaKnown RBP8.15□□□□□ -1.1
SKA1-204ENST00000488454 CRYGBP07316 175 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 OR4E1P0C645 316 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 AKR1C2P52895 323 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 CX3CL1P78423 397 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 PPP1R1AQ13522 171 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 TMEM187Q14656 261 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 FXYD3Q14802 87 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 POU2AF1Q16633 256 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 PRSS8Q16651 343 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 TMEM268Q5VZI3 342 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 OR4A47Q6IF82 309 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 CENPVQ7Z7K6 275 aaPredicted RBP8.15□□□□□ -1.1
SKA1-204ENST00000488454 PUSL1Q8N0Z8 303 aaKnown RBP8.15□□□□□ -1.1
SKA1-204ENST00000488454 COQ8AQ8NI60 647 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 CASTOR1Q8WTX7 329 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 TAF15Q92804 592 aaKnown RBP eCLIP8.15□□□□□ -1.1
SKA1-204ENST00000488454 RBPMSQ93062 196 aaKnown RBP8.15□□□□□ -1.1
SKA1-204ENST00000488454 IL22RA2Q969J5 263 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 GON7Q9BXV9 100 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 TMEM140Q9NV12 185 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 BET1LQ9NYM9 111 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 RNF114Q9Y508 228 aa8.15□□□□□ -1.1
SKA1-204ENST00000488454 IGHV7-81A0A0B4J1V7 117 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 C9orf170A2RU37 121 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 INMT-MINDY4F8WBC2 141 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 AP4M1O00189 453 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 UPK2O00526 184 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 PTTG1O95997 202 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 DHFRP00374 187 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 MAS1LP35410 378 aa8.14□□□□□ -1.11
SKA1-204ENST00000488454 RPL8P62917 257 aaKnown RBP8.14□□□□□ -1.11
SKA1-204ENST00000488454 SUPT4H1P63272 117 aaKnown RBP8.14□□□□□ -1.11
SKA1-204ENST00000488454 TMEM267Q0VDI3 215 aaPredicted RBP8.14□□□□□ -1.11
SKA1-204ENST00000488454 TNXAQ16473 311 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms