RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 ARPC1AQ92747 370 aa12.41□□□□□ -0.42
C9orf3-219ENST00000488186 NAA60Q9H7X0 242 aa12.41□□□□□ -0.42
C9orf3-219ENST00000488186 VSIG4Q9Y279 399 aa12.41□□□□□ -0.42
C9orf3-219ENST00000488186 WSB1Q9Y6I7 421 aa12.41□□□□□ -0.42
C9orf3-219ENST00000488186 MARCH11A6NNE9 402 aa12.4□□□□□ -0.42
C9orf3-219ENST00000488186 SNAPC5O75971 98 aa12.4□□□□□ -0.42
C9orf3-219ENST00000488186 KBTBD11O94819 623 aa12.4□□□□□ -0.42
C9orf3-219ENST00000488186 ANXA3P12429 323 aa12.4□□□□□ -0.42
C9orf3-219ENST00000488186 G6PCP35575 357 aa12.4□□□□□ -0.42
C9orf3-219ENST00000488186 DHODHQ02127 395 aa12.4□□□□□ -0.42
C9orf3-219ENST00000488186 SRSF4Q08170 494 aaKnown RBP12.4□□□□□ -0.42
C9orf3-219ENST00000488186 ECSCRQ19T08 205 aa12.4□□□□□ -0.42
C9orf3-219ENST00000488186 SP6Q3SY56 376 aa12.4□□□□□ -0.42
C9orf3-219ENST00000488186 ZNF585BQ52M93 769 aa12.4□□□□□ -0.42
C9orf3-219ENST00000488186 OR4A47Q6IF82 309 aa12.4□□□□□ -0.42
C9orf3-219ENST00000488186 MZT2BQ6NZ67 158 aa12.4□□□□□ -0.42
C9orf3-219ENST00000488186 ZNF430Q9H8G1 570 aaPredicted RBP12.4□□□□□ -0.42
C9orf3-219ENST00000488186 BET1LQ9NYM9 111 aa12.4□□□□□ -0.42
C9orf3-219ENST00000488186 TRAV41A0A0B4J266 112 aa12.39□□□□□ -0.43
C9orf3-219ENST00000488186 TCRBV4S1A1TA0A5B7 111 aa12.39□□□□□ -0.43
C9orf3-219ENST00000488186 CRYM-AS1A6NIL9 109 aa12.39□□□□□ -0.43
C9orf3-219ENST00000488186 LYRM1O43325 122 aa12.39□□□□□ -0.43
C9orf3-219ENST00000488186 CD28P10747 220 aa12.39□□□□□ -0.43
C9orf3-219ENST00000488186 MAS1LP35410 378 aa12.39□□□□□ -0.43
C9orf3-219ENST00000488186 RPL8P62917 257 aaKnown RBP12.39□□□□□ -0.43
C9orf3-219ENST00000488186 KHDC1LQ5JSQ8 128 aa12.39□□□□□ -0.43
C9orf3-219ENST00000488186 TEX38Q6PEX7 206 aa12.39□□□□□ -0.43
C9orf3-219ENST00000488186 UNQ5815/PRO19632Q6UWF5 114 aa12.39□□□□□ -0.43
C9orf3-219ENST00000488186 H2BFWTQ7Z2G1 175 aa12.39□□□□□ -0.43
C9orf3-219ENST00000488186 PUSL1Q8N0Z8 303 aaKnown RBP12.39□□□□□ -0.43
C9orf3-219ENST00000488186 COMMD1Q8N668 190 aa12.39□□□□□ -0.43
C9orf3-219ENST00000488186 ADAD2Q8NCV1 583 aaKnown RBP12.39□□□□□ -0.43
C9orf3-219ENST00000488186 RNASE11Q8TAA1 199 aaKnown RBP12.39□□□□□ -0.43
C9orf3-219ENST00000488186 TMEM167AQ8TBQ9 72 aa12.39□□□□□ -0.43
C9orf3-219ENST00000488186 TP53RKQ96S44 253 aa12.39□□□□□ -0.43
C9orf3-219ENST00000488186 FAM103A1Q9BTL3 118 aaKnown RBP12.39□□□□□ -0.43
C9orf3-219ENST00000488186 TMEM140Q9NV12 185 aa12.39□□□□□ -0.43
C9orf3-219ENST00000488186 G3V318 75 aa12.38□□□□□ -0.43
C9orf3-219ENST00000488186 UPK1BO75841 260 aa12.38□□□□□ -0.43
C9orf3-219ENST00000488186 OR5AC1P0C628 307 aa12.38□□□□□ -0.43
C9orf3-219ENST00000488186 KRTAP10-3P60369 221 aa12.38□□□□□ -0.43
C9orf3-219ENST00000488186 POU2AF1Q16633 256 aa12.38□□□□□ -0.43
C9orf3-219ENST00000488186 TMEM65Q6PI78 240 aa12.38□□□□□ -0.43
C9orf3-219ENST00000488186 ZNF695Q8IW36 515 aa12.38□□□□□ -0.43
C9orf3-219ENST00000488186 CENPSQ8N2Z9 138 aa12.38□□□□□ -0.43
C9orf3-219ENST00000488186 LFNGQ8NES3 379 aa12.38□□□□□ -0.43
C9orf3-219ENST00000488186 SGMS2Q8NHU3 365 aa12.38□□□□□ -0.43
C9orf3-219ENST00000488186 TSC22D3Q99576 134 aa12.38□□□□□ -0.43
C9orf3-219ENST00000488186 CITED1Q99966 193 aa12.38□□□□□ -0.43
C9orf3-219ENST00000488186 MSGN1A6NI15 193 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 UPK2O00526 184 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 ARPC1BO15143 372 aaKnown RBP12.37□□□□□ -0.43
C9orf3-219ENST00000488186 PLA2G10O15496 165 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 RBMXL2O75526 392 aaKnown RBP12.37□□□□□ -0.43
C9orf3-219ENST00000488186 NDUFB6O95139 128 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 OPN1MWP04001 364 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 OPN1MW2P0DN77 364 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 OPN1MW3P0DN78 364 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 HLA-GP17693 338 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 RPL27AP46776 148 aaKnown RBP12.37□□□□□ -0.43
C9orf3-219ENST00000488186 AKR1C2P52895 323 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 NDPQ00604 133 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 AKIRIN2Q53H80 203 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 CXorf66Q5JRM2 361 aaPredicted RBP12.37□□□□□ -0.43
C9orf3-219ENST00000488186 OR4A16Q8NH70 328 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 SRSF12Q8WXF0 261 aaKnown RBP12.37□□□□□ -0.43
C9orf3-219ENST00000488186 RRNAD1Q96FB5 475 aaKnown RBP12.37□□□□□ -0.43
C9orf3-219ENST00000488186 TMEM68Q96MH6 324 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 FYTTD1Q96QD9 318 aaKnown RBP12.37□□□□□ -0.43
C9orf3-219ENST00000488186 SPIN2AQ99865 258 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 SPIN2BQ9BPZ2 258 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 COMMD5Q9GZQ3 224 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 TMEM222Q9H0R3 208 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 ZNF580Q9UK33 172 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 NUBP2Q9Y5Y2 271 aa12.37□□□□□ -0.43
C9orf3-219ENST00000488186 FAM240BA0A1B0GVZ2 78 aa12.36□□□□□ -0.43
C9orf3-219ENST00000488186 A0A1W2PN81 502 aa12.36□□□□□ -0.43
C9orf3-219ENST00000488186 VAMP1P23763 118 aa12.36□□□□□ -0.43
C9orf3-219ENST00000488186 UCP1P25874 307 aa12.36□□□□□ -0.43
C9orf3-219ENST00000488186 CHRNA7P36544 502 aa12.36□□□□□ -0.43
C9orf3-219ENST00000488186 TMEM128Q5BJH2 165 aa12.36□□□□□ -0.43
C9orf3-219ENST00000488186 C10orf99Q6UWK7 81 aa12.36□□□□□ -0.43
C9orf3-219ENST00000488186 TMEM230Q96A57 120 aa12.36□□□□□ -0.43
C9orf3-219ENST00000488186 ZNF355PQ9NSJ1 428 aa12.36□□□□□ -0.43
C9orf3-219ENST00000488186 FKBP11Q9NYL4 201 aa12.36□□□□□ -0.43
C9orf3-219ENST00000488186 FOXA2Q9Y261 457 aaPredicted RBP12.36□□□□□ -0.43
C9orf3-219ENST00000488186 FBXO7Q9Y3I1 522 aa12.36□□□□□ -0.43
C9orf3-219ENST00000488186 TRAV3A0A0B4J244 114 aa12.35□□□□□ -0.43
C9orf3-219ENST00000488186 PIGBOS1A0A0B4J2F0 54 aa12.35□□□□□ -0.43
C9orf3-219ENST00000488186 IGKV1-39P01597 117 aa12.35□□□□□ -0.43
C9orf3-219ENST00000488186 IGKV1D-39P04432 117 aa12.35□□□□□ -0.43
C9orf3-219ENST00000488186 ELANEP08246 267 aa12.35□□□□□ -0.43
C9orf3-219ENST00000488186 PF4V1P10720 104 aa12.35□□□□□ -0.43
C9orf3-219ENST00000488186 EGR2P11161 476 aaPredicted RBP12.35□□□□□ -0.43
C9orf3-219ENST00000488186 CRIP2P52943 208 aaPredicted RBP12.35□□□□□ -0.43
C9orf3-219ENST00000488186 RAB25P57735 213 aa12.35□□□□□ -0.43
C9orf3-219ENST00000488186 DEFA1P59665 94 aa12.35□□□□□ -0.43
C9orf3-219ENST00000488186 DEFA3P59666 94 aa12.35□□□□□ -0.43
C9orf3-219ENST00000488186 SRPXP78539 464 aa12.35□□□□□ -0.43
C9orf3-219ENST00000488186 FOXE3Q13461 319 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms