RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 A0A1W2PN81 502 aa12.39□□□□□ -0.43
UPF3A-208ENST00000484246 A0A1W2PRX2 142 aa12.39□□□□□ -0.43
UPF3A-208ENST00000484246 PF4V1P10720 104 aa12.39□□□□□ -0.43
UPF3A-208ENST00000484246 NQO2P16083 231 aa12.39□□□□□ -0.43
UPF3A-208ENST00000484246 CHRNA7P36544 502 aa12.39□□□□□ -0.43
UPF3A-208ENST00000484246 RUNX1Q01196 453 aa12.39□□□□□ -0.43
UPF3A-208ENST00000484246 SURF2Q15527 256 aaPredicted RBP12.39□□□□□ -0.43
UPF3A-208ENST00000484246 UNQ5815/PRO19632Q6UWF5 114 aa12.39□□□□□ -0.43
UPF3A-208ENST00000484246 ETV3LQ6ZN32 361 aa12.39□□□□□ -0.43
UPF3A-208ENST00000484246 LFNGQ8NES3 379 aa12.39□□□□□ -0.43
UPF3A-208ENST00000484246 WFDC9Q8NEX5 89 aa12.39□□□□□ -0.43
UPF3A-208ENST00000484246 OR4C16Q8NGL9 310 aa12.39□□□□□ -0.43
UPF3A-208ENST00000484246 OR6Q1Q8NGQ2 317 aa12.39□□□□□ -0.43
UPF3A-208ENST00000484246 ABHD5Q8WTS1 349 aa12.39□□□□□ -0.43
UPF3A-208ENST00000484246 C4orf3Q8WVX3 66 aa12.39□□□□□ -0.43
UPF3A-208ENST00000484246 SRSF12Q8WXF0 261 aaKnown RBP12.39□□□□□ -0.43
UPF3A-208ENST00000484246 DEDD2Q8WXF8 326 aa12.39□□□□□ -0.43
UPF3A-208ENST00000484246 UBE2E2Q96LR5 201 aa12.39□□□□□ -0.43
UPF3A-208ENST00000484246 FAM103A1Q9BTL3 118 aaKnown RBP12.39□□□□□ -0.43
UPF3A-208ENST00000484246 S1PR2O95136 353 aa12.38□□□□□ -0.43
UPF3A-208ENST00000484246 CNIH1O95406 144 aa12.38□□□□□ -0.43
UPF3A-208ENST00000484246 RAB9AP51151 201 aa12.38□□□□□ -0.43
UPF3A-208ENST00000484246 GNB1P62873 340 aa12.38□□□□□ -0.43
UPF3A-208ENST00000484246 ZNF585BQ52M93 769 aa12.38□□□□□ -0.43
UPF3A-208ENST00000484246 PHLDA2Q53GA4 152 aa12.38□□□□□ -0.43
UPF3A-208ENST00000484246 ASPHD1Q5U4P2 390 aa12.38□□□□□ -0.43
UPF3A-208ENST00000484246 OR4A47Q6IF82 309 aa12.38□□□□□ -0.43
UPF3A-208ENST00000484246 VKORC1L1Q8N0U8 176 aa12.38□□□□□ -0.43
UPF3A-208ENST00000484246 KLHL30-AS1Q8NEE0 82 aa12.38□□□□□ -0.43
UPF3A-208ENST00000484246 MRGPRFQ96AM1 343 aa12.38□□□□□ -0.43
UPF3A-208ENST00000484246 PRRT1Q99946 306 aa12.38□□□□□ -0.43
UPF3A-208ENST00000484246 KLK15Q9H2R5 256 aa12.38□□□□□ -0.43
UPF3A-208ENST00000484246 SLA2Q9H6Q3 261 aa12.38□□□□□ -0.43
UPF3A-208ENST00000484246 DISC1C4P0D8 188 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 ACTL6BO94805 426 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 MYCNOSP40205 109 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 KLF9Q13886 244 aaPredicted RBP12.37□□□□□ -0.43
UPF3A-208ENST00000484246 TNXAQ16473 311 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 SPANXN2Q5MJ10 180 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 TMEM65Q6PI78 240 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 LCNL1Q6ZST4 164 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 C18orf65Q6ZTR6 163 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 TBC1D26Q86UD7 250 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 ZNF491Q8N8L2 437 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 ZFAND1Q8TCF1 268 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 P2RX4Q99571 388 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 SPIN2AQ99865 258 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 SPIN2BQ9BPZ2 258 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 THAP7Q9BT49 309 aaPredicted RBP12.37□□□□□ -0.43
UPF3A-208ENST00000484246 VSIG4Q9Y279 399 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 WNK1Q9H4A3 2382 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 VWFP04275 2813 aa12.37□□□□□ -0.43
UPF3A-208ENST00000484246 NUDT19A8MXV4 375 aa12.36□□□□□ -0.43
UPF3A-208ENST00000484246 H0Y980 276 aa12.36□□□□□ -0.43
UPF3A-208ENST00000484246 MPPED1O15442 326 aa12.36□□□□□ -0.43
UPF3A-208ENST00000484246 CTSDP07339 412 aaPredicted RBP12.36□□□□□ -0.43
UPF3A-208ENST00000484246 PGAM2P15259 253 aa12.36□□□□□ -0.43
UPF3A-208ENST00000484246 PPP5CP53041 499 aa12.36□□□□□ -0.43
UPF3A-208ENST00000484246 AP3S2P59780 193 aa12.36□□□□□ -0.43
UPF3A-208ENST00000484246 RPL8P62917 257 aaKnown RBP12.36□□□□□ -0.43
UPF3A-208ENST00000484246 FHL3Q13643 280 aa12.36□□□□□ -0.43
UPF3A-208ENST00000484246 FAAP20Q6NZ36 180 aa12.36□□□□□ -0.43
UPF3A-208ENST00000484246 C8orf86Q6ZUL3 223 aa12.36□□□□□ -0.43
UPF3A-208ENST00000484246 Q8N402 240 aa12.36□□□□□ -0.43
UPF3A-208ENST00000484246 LINC00482Q8N8I6 264 aa12.36□□□□□ -0.43
UPF3A-208ENST00000484246 OR13C8Q8NGS7 320 aa12.36□□□□□ -0.43
UPF3A-208ENST00000484246 SRRQ9GZT4 340 aa12.36□□□□□ -0.43
UPF3A-208ENST00000484246 TMEM140Q9NV12 185 aa12.36□□□□□ -0.43
UPF3A-208ENST00000484246 MSGN1A6NI15 193 aa12.35□□□□□ -0.43
UPF3A-208ENST00000484246 MARCH11A6NNE9 402 aa12.35□□□□□ -0.43
UPF3A-208ENST00000484246 TEX22C9J3V5 150 aa12.35□□□□□ -0.43
UPF3A-208ENST00000484246 UPK2O00526 184 aa12.35□□□□□ -0.43
UPF3A-208ENST00000484246 B3GALNT1O75752 331 aa12.35□□□□□ -0.43
UPF3A-208ENST00000484246 PF4P02776 101 aa12.35□□□□□ -0.43
UPF3A-208ENST00000484246 RPA2P15927 270 aa12.35□□□□□ -0.43
UPF3A-208ENST00000484246 HLA-GP17693 338 aa12.35□□□□□ -0.43
UPF3A-208ENST00000484246 CD40LGP29965 261 aa12.35□□□□□ -0.43
UPF3A-208ENST00000484246 PIGPP57054 158 aa12.35□□□□□ -0.43
UPF3A-208ENST00000484246 ERVK-16P61578 105 aa12.35□□□□□ -0.43
UPF3A-208ENST00000484246 SCGB2B2Q4G0G5 96 aa12.35□□□□□ -0.43
UPF3A-208ENST00000484246 PYDC2Q56P42 97 aa12.35□□□□□ -0.43
UPF3A-208ENST00000484246 C10orf55Q5SWW7 151 aa12.35□□□□□ -0.43
UPF3A-208ENST00000484246 LINC00299Q6ZSB3 139 aa12.35□□□□□ -0.43
UPF3A-208ENST00000484246 CCDC71LQ8N9Z2 235 aa12.35□□□□□ -0.43
UPF3A-208ENST00000484246 ADAD2Q8NCV1 583 aaKnown RBP12.35□□□□□ -0.43
UPF3A-208ENST00000484246 SRSF8Q9BRL6 282 aaKnown RBP12.35□□□□□ -0.43
UPF3A-208ENST00000484246 A6NHS1 94 aa12.34□□□□□ -0.43
UPF3A-208ENST00000484246 I3L521 148 aa12.34□□□□□ -0.43
UPF3A-208ENST00000484246 OR9G9P0C7N8 305 aa12.34□□□□□ -0.43
UPF3A-208ENST00000484246 FAUP35544 74 aaKnown RBP12.34□□□□□ -0.43
UPF3A-208ENST00000484246 LPAR6P43657 344 aa12.34□□□□□ -0.43
UPF3A-208ENST00000484246 RPL27AP46776 148 aaKnown RBP12.34□□□□□ -0.43
UPF3A-208ENST00000484246 KLK9Q2XQG4 91 aa12.34□□□□□ -0.43
UPF3A-208ENST00000484246 THOC7Q6I9Y2 204 aaKnown RBP12.34□□□□□ -0.43
UPF3A-208ENST00000484246 SSX9Q7RTT3 188 aa12.34□□□□□ -0.43
UPF3A-208ENST00000484246 GDPD1Q8N9F7 314 aa12.34□□□□□ -0.43
UPF3A-208ENST00000484246 OR51S1Q8NGJ8 323 aa12.34□□□□□ -0.43
UPF3A-208ENST00000484246 MARCH1Q8TCQ1 289 aa12.34□□□□□ -0.43
UPF3A-208ENST00000484246 RAX2Q96IS3 184 aa12.34□□□□□ -0.43
UPF3A-208ENST00000484246 GNB4Q9HAV0 340 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms