RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 IL34Q6ZMJ4 242 aa11.37□□□□□ -0.59
LIMS3-204ENST00000482065 TMEM17Q86X19 198 aa11.37□□□□□ -0.59
LIMS3-204ENST00000482065 SBSPONQ8IVN8 264 aa11.37□□□□□ -0.59
LIMS3-204ENST00000482065 SPAG16Q8N0X2 631 aa11.37□□□□□ -0.59
LIMS3-204ENST00000482065 TTC9CQ8N5M4 171 aa11.37□□□□□ -0.59
LIMS3-204ENST00000482065 SAMD12Q8N8I0 201 aa11.37□□□□□ -0.59
LIMS3-204ENST00000482065 OR5AP2Q8NGF4 316 aa11.37□□□□□ -0.59
LIMS3-204ENST00000482065 VSTM2AQ8TAG5 236 aa11.37□□□□□ -0.59
LIMS3-204ENST00000482065 S100A16Q96FQ6 103 aaKnown RBP11.37□□□□□ -0.59
LIMS3-204ENST00000482065 FYTTD1Q96QD9 318 aaKnown RBP11.37□□□□□ -0.59
LIMS3-204ENST00000482065 IFT46Q9NQC8 304 aa11.37□□□□□ -0.59
LIMS3-204ENST00000482065 FAM223BA6NKX1 122 aa11.36□□□□□ -0.59
LIMS3-204ENST00000482065 BMPR1BO00238 502 aa11.36□□□□□ -0.59
LIMS3-204ENST00000482065 FRMD6-AS1P0C7T7 363 aa11.36□□□□□ -0.59
LIMS3-204ENST00000482065 KIR2DS2P43631 304 aa11.36□□□□□ -0.59
LIMS3-204ENST00000482065 TAS2R20P59543 309 aa11.36□□□□□ -0.59
LIMS3-204ENST00000482065 ATP5G2Q06055 141 aa11.36□□□□□ -0.59
LIMS3-204ENST00000482065 MSMO1Q15800 293 aa11.36□□□□□ -0.59
LIMS3-204ENST00000482065 RPEL1Q2QD12 228 aa11.36□□□□□ -0.59
LIMS3-204ENST00000482065 TMEM69Q5SWH9 247 aa11.36□□□□□ -0.59
LIMS3-204ENST00000482065 ZNF818PQ6ZRF7 136 aa11.36□□□□□ -0.59
LIMS3-204ENST00000482065 FAM223AQ8IWN6 122 aa11.36□□□□□ -0.59
LIMS3-204ENST00000482065 GIMAP1Q8WWP7 306 aa11.36□□□□□ -0.59
LIMS3-204ENST00000482065 EHFQ9NZC4 300 aa11.36□□□□□ -0.59
LIMS3-204ENST00000482065 HRASP01112 189 aa11.35□□□□□ -0.59
LIMS3-204ENST00000482065 CSN3P07498 182 aa11.35□□□□□ -0.59
LIMS3-204ENST00000482065 ZNF735P0CB33 412 aa11.35□□□□□ -0.59
LIMS3-204ENST00000482065 AREGP15514 252 aa11.35□□□□□ -0.59
LIMS3-204ENST00000482065 RFX2P48378 723 aa11.35□□□□□ -0.59
LIMS3-204ENST00000482065 NCS1P62166 190 aa11.35□□□□□ -0.59
LIMS3-204ENST00000482065 C15orf32Q32M92 178 aa11.35□□□□□ -0.59
LIMS3-204ENST00000482065 SLC25A42Q86VD7 318 aa11.35□□□□□ -0.59
LIMS3-204ENST00000482065 ZBTB34Q8NCN2 500 aa11.35□□□□□ -0.59
LIMS3-204ENST00000482065 OR51H1Q8NH63 302 aa11.35□□□□□ -0.59
LIMS3-204ENST00000482065 ANAPC10Q9UM13 185 aa11.35□□□□□ -0.59
LIMS3-204ENST00000482065 ZNF257Q9Y2Q1 563 aa11.35□□□□□ -0.59
LIMS3-204ENST00000482065 STAB2Q8WWQ8 2551 aa11.35□□□□□ -0.59
LIMS3-204ENST00000482065 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.34□□□□□ -0.59
LIMS3-204ENST00000482065 DPPA5A6NC42 116 aa11.34□□□□□ -0.59
LIMS3-204ENST00000482065 NPIPB5A8MRT5 1133 aa11.34□□□□□ -0.59
LIMS3-204ENST00000482065 PMP2P02689 132 aa11.34□□□□□ -0.59
LIMS3-204ENST00000482065 EIF4EP06730 217 aaKnown RBP11.34□□□□□ -0.59
LIMS3-204ENST00000482065 MAS1LP35410 378 aa11.34□□□□□ -0.59
LIMS3-204ENST00000482065 HERV-K104P61576 105 aa11.34□□□□□ -0.59
LIMS3-204ENST00000482065 RPL8P62917 257 aaKnown RBP11.34□□□□□ -0.59
LIMS3-204ENST00000482065 CATR1Q13166 79 aa11.34□□□□□ -0.59
LIMS3-204ENST00000482065 TATDN3Q17R31 274 aa11.34□□□□□ -0.59
LIMS3-204ENST00000482065 OR4A47Q6IF82 309 aa11.34□□□□□ -0.59
LIMS3-204ENST00000482065 Q8N1Y9 231 aa11.34□□□□□ -0.59
LIMS3-204ENST00000482065 NECAP1Q8NC96 275 aa11.34□□□□□ -0.59
LIMS3-204ENST00000482065 SLC25A46Q96AG3 418 aa11.34□□□□□ -0.59
LIMS3-204ENST00000482065 FUNDC2Q9BWH2 189 aa11.34□□□□□ -0.59
LIMS3-204ENST00000482065 HRASLSQ9HDD0 168 aa11.34□□□□□ -0.59
LIMS3-204ENST00000482065 SLC2A9Q9NRM0 540 aa11.34□□□□□ -0.59
LIMS3-204ENST00000482065 BET1LQ9NYM9 111 aa11.34□□□□□ -0.59
LIMS3-204ENST00000482065 TRAV3A0A0B4J244 114 aa11.33□□□□□ -0.6
LIMS3-204ENST00000482065 CGB1A6NKQ9 187 aa11.33□□□□□ -0.6
LIMS3-204ENST00000482065 PPP5D1E7EU14 171 aa11.33□□□□□ -0.6
LIMS3-204ENST00000482065 RBFOX2O43251 390 aaKnown RBP eCLIP11.33□□□□□ -0.6
LIMS3-204ENST00000482065 S1PR2O95136 353 aa11.33□□□□□ -0.6
LIMS3-204ENST00000482065 IGHV3-23P01764 117 aa11.33□□□□□ -0.6
LIMS3-204ENST00000482065 REG1AP05451 166 aa11.33□□□□□ -0.6
LIMS3-204ENST00000482065 IGHV4-30-4P0DP06 118 aa11.33□□□□□ -0.6
LIMS3-204ENST00000482065 HLA-GP17693 338 aa11.33□□□□□ -0.6
LIMS3-204ENST00000482065 GNRHRP30968 328 aa11.33□□□□□ -0.6
LIMS3-204ENST00000482065 VBP1P61758 197 aa11.33□□□□□ -0.6
LIMS3-204ENST00000482065 AADACL3Q5VUY0 350 aa11.33□□□□□ -0.6
LIMS3-204ENST00000482065 FANCD2OSQ96PS1 177 aa11.33□□□□□ -0.6
LIMS3-204ENST00000482065 ZNF2Q9BSG1 426 aaPredicted RBP11.33□□□□□ -0.6
LIMS3-204ENST00000482065 COMMD3Q9UBI1 195 aa11.33□□□□□ -0.6
LIMS3-204ENST00000482065 FBXL7Q9UJT9 491 aa11.33□□□□□ -0.6
LIMS3-204ENST00000482065 S4R3C0 116 aa11.33□□□□□ -0.6
LIMS3-204ENST00000482065 NBEAL2Q6ZNJ1 2754 aa11.33□□□□□ -0.6
LIMS3-204ENST00000482065 IZUMO1RA6ND01 250 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 NDUFB8O95169 186 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 HPRT1P00492 218 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 HLA-AP01891 365 aaKnown RBP11.32□□□□□ -0.6
LIMS3-204ENST00000482065 CRYGCP07315 174 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 RPA2P15927 270 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 CTRB1P17538 263 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 NAT1P18440 290 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 PSMB6P28072 239 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 PRSS3P35030 304 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 TAS2R31P59538 309 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 CTRB2Q6GPI1 263 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 OR5H2Q8NGV7 314 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 OR4A5Q8NH83 315 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 MOB3AQ96BX8 217 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 KCTD12Q96CX2 325 aaKnown RBP11.32□□□□□ -0.6
LIMS3-204ENST00000482065 RCHY1Q96PM5 261 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 FXYD6Q9H0Q3 95 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 DMRT1Q9Y5R6 373 aa11.32□□□□□ -0.6
LIMS3-204ENST00000482065 H0Y980 276 aa11.31□□□□□ -0.6
LIMS3-204ENST00000482065 UPK2O00526 184 aa11.31□□□□□ -0.6
LIMS3-204ENST00000482065 RLN1P04808 185 aa11.31□□□□□ -0.6
LIMS3-204ENST00000482065 NQO2P16083 231 aa11.31□□□□□ -0.6
LIMS3-204ENST00000482065 EDN2P20800 178 aa11.31□□□□□ -0.6
LIMS3-204ENST00000482065 HLA-DMAP28067 261 aa11.31□□□□□ -0.6
LIMS3-204ENST00000482065 TAS2R46P59540 309 aa11.31□□□□□ -0.6
LIMS3-204ENST00000482065 OR2B8PP59922 312 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms