RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 GRPEL2Q8TAA5 225 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 SCARB1Q8WTV0 552 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 CASTOR1Q8WTX7 329 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 DCUN1D4Q92564 292 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 B9D2Q9BPU9 175 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 ST6GALNAC5Q9BVH7 336 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 ALX4Q9H161 411 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 OR51E2Q9H255 320 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 DCSTAMPQ9H295 470 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 SLA2Q9H6Q3 261 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 SCOCQ9UIL1 159 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 ELF5Q9UKW6 265 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 IGKV1D-8A0A087WSZ0 117 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 LOC100506127A0A0U1RQW1 187 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 TMEM235A6NFC5 223 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 L7N2F9 121 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 ARPC1BO15143 372 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 SLC22A5O76082 557 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 TRGV3P03979 118 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 HSPB1P04792 205 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 CRYGBP07316 175 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 CD36P16671 472 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 GNG2P59768 71 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 NEDD8Q15843 81 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 VMA21Q3ZAQ7 101 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 KCTD21Q4G0X4 260 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 VAX1Q5SQQ9 334 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 CNIH2Q6PI25 160 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 TEX45Q8NA69 505 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 LGALS14Q8TCE9 139 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 NUDCD2Q8WVJ2 157 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 DDB2Q92466 427 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 DLX4Q92988 240 aaPredicted RBP5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 C5orf30Q96GV9 206 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 TMEM68Q96MH6 324 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 MS4A10Q96PG2 267 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 PRR25Q96S07 402 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 WDR12Q9GZL7 423 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 ZNF355PQ9NSJ1 428 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 RHBDL2Q9NX52 303 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 ZNF256Q9Y2P7 627 aaPredicted RBP5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 OR2W1Q9Y3N9 320 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 ETV7Q9Y603 341 aa5.24□□□□□ -1.57
CCDC88A-213ENST00000476903 IGHV4OR15-8A0A075B7B6 117 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 A0A087WW49 117 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 A0A0A6YYH2 397 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 A0A0G2JLM5 398 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 C13orf42A0A1B0GVH6 325 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 A6NJ64 397 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 SRRM4A7MD48 611 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 LINC00473A8K010 186 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 CREBL2O60519 120 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 TMEM127O75204 238 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 SAP30O75446 220 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 LY86O95711 162 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 CRYZL1O95825 349 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 IGHV3-11P01762 117 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 HLA-DQB1P01920 261 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 NHLRC4P0CG21 123 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 NFYAP23511 347 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 DUTP33316 252 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 UBE2KP61086 200 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 MXD1Q05195 221 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 PJVKQ0ZLH3 352 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 TIMM50Q3ZCQ8 353 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 IDNKQ5T6J7 187 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 ACSM6Q6P461 480 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 POC5Q8NA72 575 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 ZBTB8BQ8NAP8 495 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 OR5T1Q8NG75 326 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 OR6Q1Q8NGQ2 317 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 OSR1Q8TAX0 266 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 PHB2Q99623 299 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 RNF167Q9H6Y7 350 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 ANXA10Q9UJ72 324 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 MRPS7Q9Y2R9 242 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 PRELID3BQ9Y3B1 194 aa5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 LSM4Q9Y4Z0 139 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-213ENST00000476903 TRAV18A0A075B6X5 111 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 J3QRK9 145 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 SSX5O60225 188 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 FCGR3BO75015 233 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 TUSC2O75896 110 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 ACTL6BO94805 426 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 BRI3O95415 125 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 SAA1P0DJI8 122 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 ZP3P21754 424 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 AADACP22760 399 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 ELLP55199 621 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 ARPC4P59998 168 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 SSBP2P81877 361 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 CDK10Q15131 360 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 TNXAQ16473 311 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 PRSS8Q16651 343 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 C11orf87Q6NUJ2 197 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 IDO2Q6ZQW0 420 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 KCTD9Q7L273 389 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 OVCH2Q7RTZ1 564 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 CROCCP3Q8IVE0 287 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 OR5H6Q8NGV6 325 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 568.8 ms