RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 PLGLAQ15195 96 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 MRGPRG-AS1Q2M3A8 158 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 ZNF562Q6V9R5 426 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 FAM219AQ8IW50 185 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 DMBX1Q8NFW5 382 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 LHFPL5Q8TAF8 219 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 TMEM140Q9NV12 185 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 PLXNB1O43157 2135 aa12.04□□□□□ -0.48
NPHP4-205ENST00000466897 A0A0B4J2A0 478 aa12.03□□□□□ -0.48
NPHP4-205ENST00000466897 KRASP01116 189 aa12.03□□□□□ -0.48
NPHP4-205ENST00000466897 MAS1LP35410 378 aa12.03□□□□□ -0.48
NPHP4-205ENST00000466897 G6PCP35575 357 aa12.03□□□□□ -0.48
NPHP4-205ENST00000466897 PRSS8Q16651 343 aa12.03□□□□□ -0.48
NPHP4-205ENST00000466897 C4orf46Q504U0 113 aa12.03□□□□□ -0.48
NPHP4-205ENST00000466897 Q6ZSV7 163 aa12.03□□□□□ -0.48
NPHP4-205ENST00000466897 ZNF695Q8IW36 515 aa12.03□□□□□ -0.48
NPHP4-205ENST00000466897 MMD2Q8IY49 270 aa12.03□□□□□ -0.48
NPHP4-205ENST00000466897 SELENOHQ8IZQ5 122 aaKnown RBP12.03□□□□□ -0.48
NPHP4-205ENST00000466897 VKORC1L1Q8N0U8 176 aa12.03□□□□□ -0.48
NPHP4-205ENST00000466897 LSM10Q969L4 123 aaKnown RBP12.03□□□□□ -0.48
NPHP4-205ENST00000466897 TPSG1Q9NRR2 321 aa12.03□□□□□ -0.48
NPHP4-205ENST00000466897 SHPKQ9UHJ6 478 aa12.03□□□□□ -0.48
NPHP4-205ENST00000466897 MMP24Q9Y5R2 645 aa12.03□□□□□ -0.48
NPHP4-205ENST00000466897 TET2Q6N021 2002 aaPredicted RBP12.03□□□□□ -0.48
NPHP4-205ENST00000466897 IGHV7-81A0A0B4J1V7 117 aa12.02□□□□□ -0.49
NPHP4-205ENST00000466897 INMT-MINDY4F8WBC2 141 aa12.02□□□□□ -0.49
NPHP4-205ENST00000466897 UPK2O00526 184 aa12.02□□□□□ -0.49
NPHP4-205ENST00000466897 IGKV1-5P01602 117 aa12.02□□□□□ -0.49
NPHP4-205ENST00000466897 VDAC1P21796 283 aa12.02□□□□□ -0.49
NPHP4-205ENST00000466897 AKR1C2P52895 323 aa12.02□□□□□ -0.49
NPHP4-205ENST00000466897 CRIP2P52943 208 aaPredicted RBP12.02□□□□□ -0.49
NPHP4-205ENST00000466897 ANKRD55Q3KP44 614 aa12.02□□□□□ -0.49
NPHP4-205ENST00000466897 TMEM268Q5VZI3 342 aa12.02□□□□□ -0.49
NPHP4-205ENST00000466897 MINDY2Q8NBR6 621 aa12.02□□□□□ -0.49
NPHP4-205ENST00000466897 OR4F5Q8NH21 305 aa12.02□□□□□ -0.49
NPHP4-205ENST00000466897 OR2T6Q8NHC8 308 aa12.02□□□□□ -0.49
NPHP4-205ENST00000466897 COQ8AQ8NI60 647 aa12.02□□□□□ -0.49
NPHP4-205ENST00000466897 MITD1Q8WV92 249 aa12.02□□□□□ -0.49
NPHP4-205ENST00000466897 ZNF430Q9H8G1 570 aaPredicted RBP12.02□□□□□ -0.49
NPHP4-205ENST00000466897 A0A1B0GUS0 222 aa12.01□□□□□ -0.49
NPHP4-205ENST00000466897 DHFRP00374 187 aa12.01□□□□□ -0.49
NPHP4-205ENST00000466897 CA2P00918 260 aa12.01□□□□□ -0.49
NPHP4-205ENST00000466897 IGF1P05019 195 aa12.01□□□□□ -0.49
NPHP4-205ENST00000466897 RAB25P57735 213 aa12.01□□□□□ -0.49
NPHP4-205ENST00000466897 RPL8P62917 257 aaKnown RBP12.01□□□□□ -0.49
NPHP4-205ENST00000466897 CX3CL1P78423 397 aa12.01□□□□□ -0.49
NPHP4-205ENST00000466897 SSBP2P81877 361 aaPredicted RBP12.01□□□□□ -0.49
NPHP4-205ENST00000466897 SRSF2Q01130 221 aaKnown RBP12.01□□□□□ -0.49
NPHP4-205ENST00000466897 OXA1LQ15070 435 aa12.01□□□□□ -0.49
NPHP4-205ENST00000466897 SSX9Q7RTT3 188 aa12.01□□□□□ -0.49
NPHP4-205ENST00000466897 H2BFWTQ7Z2G1 175 aa12.01□□□□□ -0.49
NPHP4-205ENST00000466897 SLC35E3Q7Z769 313 aa12.01□□□□□ -0.49
NPHP4-205ENST00000466897 SLC35G3Q8N808 338 aa12.01□□□□□ -0.49
NPHP4-205ENST00000466897 ZNF431Q8TF32 576 aaPredicted RBP12.01□□□□□ -0.49
NPHP4-205ENST00000466897 CASTOR1Q8WTX7 329 aa12.01□□□□□ -0.49
NPHP4-205ENST00000466897 RRNAD1Q96FB5 475 aaKnown RBP12.01□□□□□ -0.49
NPHP4-205ENST00000466897 PHB2Q99623 299 aa12.01□□□□□ -0.49
NPHP4-205ENST00000466897 HSPB9Q9BQS6 159 aa12.01□□□□□ -0.49
NPHP4-205ENST00000466897 OR51J1Q9H342 316 aa12.01□□□□□ -0.49
NPHP4-205ENST00000466897 SNRPGP15A8MWD9 76 aa12□□□□□ -0.49
NPHP4-205ENST00000466897 FCN1O00602 326 aa12□□□□□ -0.49
NPHP4-205ENST00000466897 SPNP16150 400 aa12□□□□□ -0.49
NPHP4-205ENST00000466897 HLA-GP17693 338 aa12□□□□□ -0.49
NPHP4-205ENST00000466897 KRTAP24-1Q3LI83 254 aa12□□□□□ -0.49
NPHP4-205ENST00000466897 NMSQ5H8A3 153 aa12□□□□□ -0.49
NPHP4-205ENST00000466897 Q6ZS46 218 aa12□□□□□ -0.49
NPHP4-205ENST00000466897 FOXRED2Q8IWF2 684 aa12□□□□□ -0.49
NPHP4-205ENST00000466897 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12□□□□□ -0.49
NPHP4-205ENST00000466897 GPN1Q9HCN4 374 aaPredicted RBP12□□□□□ -0.49
NPHP4-205ENST00000466897 TMEM14BQ9NUH8 114 aa12□□□□□ -0.49
NPHP4-205ENST00000466897 COA4Q9NYJ1 87 aa12□□□□□ -0.49
NPHP4-205ENST00000466897 FKBP11Q9NYL4 201 aa12□□□□□ -0.49
NPHP4-205ENST00000466897 PRNDQ9UKY0 176 aa12□□□□□ -0.49
NPHP4-205ENST00000466897 TMED3Q9Y3Q3 217 aa12□□□□□ -0.49
NPHP4-205ENST00000466897 TMEM89A2RUT3 159 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 DBX1A6NMT0 343 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 C15orf61A6NNL5 157 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 AP4M1O00189 453 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 SNAPC5O75971 98 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 ACTL6BO94805 426 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 OR9G9P0C7N8 305 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 SLC25A6P12236 298 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 COMPP49747 757 aaPredicted RBP11.99□□□□□ -0.49
NPHP4-205ENST00000466897 NDPQ00604 133 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 PJVKQ0ZLH3 352 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 FOXL1Q12952 345 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 AARDQ4LEZ3 155 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 THOC7Q6I9Y2 204 aaKnown RBP11.99□□□□□ -0.49
NPHP4-205ENST00000466897 ZNF429Q86V71 674 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 OR52B4Q8NGK2 314 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 LINC01006Q8NI28 216 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 CHPT1Q8WUD6 406 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 TMEM158Q8WZ71 300 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 ARPC1AQ92747 370 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 SEC22CQ9BRL7 303 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 BEX1Q9HBH7 125 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 SERTAD4Q9NUC0 356 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 PRR13Q9NZ81 148 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 CACFD1Q9UGQ2 172 aa11.99□□□□□ -0.49
NPHP4-205ENST00000466897 FOXA2Q9Y261 457 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms