RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 SOX15O60248 233 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 KBTBD11O94819 623 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 KRASP01116 189 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 ZNF735P0CB33 412 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 MYOD1P15172 320 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 F2RP25116 425 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 CD40LGP29965 261 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 PPIFP30405 207 aaKnown RBP9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 G6PCP35575 357 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 UCP3P55916 312 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 PIGPP57054 158 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 ERVK-16P61578 105 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 ZNF79Q15937 498 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 AKIRIN2Q53H80 203 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 OR4A47Q6IF82 309 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 CCDC190Q86UF4 302 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 ZNF695Q8IW36 515 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 MMD2Q8IY49 270 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 MINDY2Q8NBR6 621 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 OR51S1Q8NGJ8 323 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 OR13C8Q8NGS7 320 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 VSTM2AQ8TAG5 236 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 ZFAND1Q8TCF1 268 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 CD300LFQ8TDQ1 290 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 SRSF12Q8WXF0 261 aaKnown RBP9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 AIFM2Q9BRQ8 373 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 SLC2A9Q9NRM0 540 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 ZFP57Q9NU63 452 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 COA4Q9NYJ1 87 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 COPZ2Q9P299 210 aa9.4□□□□□ -0.9
SHROOM3-202ENST00000466541 CMYA5Q8N3K9 4069 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 TRAV3A0A0B4J244 114 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 LINC00854A0A1B0GVQ3 168 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 HMX3A6NHT5 357 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 RBFOX2O43251 390 aaKnown RBP eCLIP9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 CREBL2O60519 120 aaPredicted RBP9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 IGLV1-40P01703 118 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 IGHV3-11P01762 117 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 TRGV3P03979 118 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 NQO2P16083 231 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 CD33P20138 364 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 PSMB8P28062 276 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 INPP1P49441 399 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 RAB9AP51151 201 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 TPPP2P59282 170 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 TAS2R31P59538 309 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 DEFA5Q01523 94 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 ZNF57Q68EA5 555 aaPredicted RBP9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 LHFPL1Q86WI0 220 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 C1QL4Q86Z23 238 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 PUSL1Q8N0Z8 303 aaKnown RBP9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 TOMM5Q8N4H5 51 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 GNB4Q9HAV0 340 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 PLEKHA2Q9HB19 425 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 TMEM140Q9NV12 185 aa9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 C14orf166Q9Y224 244 aaKnown RBP9.39□□□□□ -0.91
SHROOM3-202ENST00000466541 PRH1P02810 166 aa9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 SERPINE2P07093 398 aa9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 CRIP2P52943 208 aaPredicted RBP9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 RPL8P62917 257 aaKnown RBP9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 SP6Q3SY56 376 aa9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 ZNF585BQ52M93 769 aa9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 C19orf54Q5BKX5 351 aa9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 TCTEX1D1Q8N7M0 179 aa9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 OR5M8Q8NGP6 311 aa9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 TMEM167AQ8TBQ9 72 aa9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 RAX2Q96IS3 184 aa9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 PRRT1Q99946 306 aa9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 ALX4Q9H161 411 aaPredicted RBP9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 ZNF580Q9UK33 172 aa9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 VSIG4Q9Y279 399 aa9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 NSG2Q9Y328 171 aa9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 NOTCH1P46531 2555 aa9.38□□□□□ -0.91
SHROOM3-202ENST00000466541 TEX13DA0A0J9YY54 714 aaPredicted RBP9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 MARCH11A6NNE9 402 aa9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 UPK2O00526 184 aa9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 REG1AP05451 166 aa9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 HLA-GP17693 338 aa9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 RPL27AP46776 148 aaKnown RBP9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 CDX1P47902 265 aaPredicted RBP9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 AP3S2P59780 193 aa9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 ASPHD1Q5U4P2 390 aa9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 ZNF491Q8N8L2 437 aa9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 RNF152Q8N8N0 203 aa9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 CCDC71LQ8N9Z2 235 aa9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 MRGPRFQ96AM1 343 aa9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 ZNF486Q96H40 463 aaPredicted RBP9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 SPIN2AQ99865 258 aa9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 SPIN2BQ9BPZ2 258 aa9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 HINT2Q9BX68 163 aa9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 COMMD9Q9P000 198 aa9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 SCP2D1Q9UJQ7 156 aa9.37□□□□□ -0.91
SHROOM3-202ENST00000466541 NOTCH3Q9UM47 2321 aa9.36□□□□□ -0.91
SHROOM3-202ENST00000466541 C3orf85A0A1B0GTC6 90 aa9.36□□□□□ -0.91
SHROOM3-202ENST00000466541 C13orf42A0A1B0GVH6 325 aa9.36□□□□□ -0.91
SHROOM3-202ENST00000466541 A6NHS1 94 aa9.36□□□□□ -0.91
SHROOM3-202ENST00000466541 E7EUB6 86 aa9.36□□□□□ -0.91
SHROOM3-202ENST00000466541 CCL24O00175 119 aa9.36□□□□□ -0.91
SHROOM3-202ENST00000466541 SNAPC5O75971 98 aa9.36□□□□□ -0.91
SHROOM3-202ENST00000466541 CTSDP07339 412 aaPredicted RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms