RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 CT45A7P0DMV0 189 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 ATP5IP56385 69 aaPredicted RBP9.54□□□□□ -0.88
USP54-209ENST00000464635 S100A10P60903 97 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 SCGB2A2Q13296 93 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 LTC4SQ16873 150 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 RTL8BQ17RB0 113 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 FAM53AQ6NSI3 398 aaPredicted RBP9.54□□□□□ -0.88
USP54-209ENST00000464635 C12orf54Q6X4T0 127 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 Q6ZRM9 215 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 H2BFWTQ7Z2G1 175 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 PDPNQ86YL7 162 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 PUSL1Q8N0Z8 303 aaKnown RBP9.54□□□□□ -0.88
USP54-209ENST00000464635 OR2C3Q8N628 320 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 TEX29Q8N6K0 151 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 OR8H1Q8NGG4 311 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 OR13D1Q8NGV5 346 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 RNASE11Q8TAA1 199 aaKnown RBP9.54□□□□□ -0.88
USP54-209ENST00000464635 NANPQ8TBE9 248 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 SCARB1Q8WTV0 552 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 GPHA2Q96T91 129 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 CLEC7AQ9BXN2 247 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 UBQLN2Q9UHD9 624 aa9.54□□□□□ -0.88
USP54-209ENST00000464635 OOSP1A8MZH6 123 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 WRBO00258 174 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 SYNGR2O43760 224 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 APOA2P02652 100 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 GATA3P23771 443 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 LGALS7P47929 136 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 RAB13P51153 203 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 ERVK-16P61578 105 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 RPL23AP62750 156 aaKnown RBP9.53□□□□□ -0.88
USP54-209ENST00000464635 PAX2Q02962 417 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 ZNF816Q0VGE8 651 aaPredicted RBP9.53□□□□□ -0.88
USP54-209ENST00000464635 HLA-DRB5Q30154 266 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 TMEM177Q53S58 311 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 RPL39P5Q59GN2 51 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 KLF17Q5JT82 389 aaPredicted RBP9.53□□□□□ -0.88
USP54-209ENST00000464635 EIF5AL1Q6IS14 154 aaKnown RBP9.53□□□□□ -0.88
USP54-209ENST00000464635 STPG2Q8N412 459 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 ZNF383Q8NA42 475 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 UBAC2Q8NBM4 344 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 OR10X1Q8NGY0 326 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 OR4A5Q8NH83 315 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 R3HDM4Q96D70 268 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 FKBP11Q9NYL4 201 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 CACNG5Q9UF02 275 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 LSM5Q9Y4Y9 91 aaKnown RBP9.53□□□□□ -0.88
USP54-209ENST00000464635 INSIG2Q9Y5U4 225 aa9.53□□□□□ -0.88
USP54-209ENST00000464635 IGHV2-26A0A0B4J1V2 119 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 A0A0G2JRQ6 117 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 CHST1O43916 411 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 FCGR3BO75015 233 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 S1PR2O95136 353 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 KRASP01116 189 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 TPT1P13693 172 aaKnown RBP9.52□□□□□ -0.89
USP54-209ENST00000464635 VAMP2P63027 116 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 TNFRSF9Q07011 255 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 TUSC1Q2TAM9 212 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 CXorf66Q5JRM2 361 aaPredicted RBP9.52□□□□□ -0.89
USP54-209ENST00000464635 CLLU1Q5K131 121 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 BTNL3Q6UXE8 466 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 BCL6BQ8N143 479 aaPredicted RBP9.52□□□□□ -0.89
USP54-209ENST00000464635 OR4C13Q8NGP0 309 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 VSTM2AQ8TAG5 236 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 ST8SIA2Q92186 375 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 ARV1Q9H2C2 271 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 SLC25A32Q9H2D1 315 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 CYTL1Q9NRR1 136 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 BET1LQ9NYM9 111 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 ZNF257Q9Y2Q1 563 aa9.52□□□□□ -0.89
USP54-209ENST00000464635 SOX21Q9Y651 276 aaPredicted RBP9.52□□□□□ -0.89
USP54-209ENST00000464635 IGHV3OR16-10A0A075B7F0 116 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 TMEM89A2RUT3 159 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 C22orf46C9J442 243 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 INS-IGF2F8WCM5 200 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 H0YJW9 148 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 LY6LH3BQJ8 138 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 BUB1B-PAK6H3BSN5 160 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 TRIM77I1YAP6 450 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 G6PCP35575 357 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 PAX9P55771 341 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 SPCS3P61009 180 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 UBE2KP61086 200 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 POLR2GP62487 172 aaKnown RBP eCLIP9.51□□□□□ -0.89
USP54-209ENST00000464635 EXOSC2Q13868 293 aaKnown RBP9.51□□□□□ -0.89
USP54-209ENST00000464635 ZNF266Q14584 549 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 MINOS1Q5TGZ0 78 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 BAP18Q8IXM2 172 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 TMEM252Q8N6L7 170 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 Q8N7P7 452 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 SIGLECL1Q8N7X8 197 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 LHX4Q969G2 390 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 RHOVQ96L33 236 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 ZNF48Q96MX3 618 aaPredicted RBP9.51□□□□□ -0.89
USP54-209ENST00000464635 DUX5Q96PT3 197 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 NABP2Q9BQ15 211 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 SLC35D1Q9NTN3 355 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 MED9Q9NWA0 146 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 AUP1Q9Y679 476 aa9.51□□□□□ -0.89
USP54-209ENST00000464635 MINOS1-NBL1R4GNA1 71 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms