RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 MARCH1Q8TCQ1 289 aa11.36□□□□□ -0.59
SQSTM1-205ENST00000464493 TRIM63Q969Q1 353 aa11.36□□□□□ -0.59
SQSTM1-205ENST00000464493 R3HDM4Q96D70 268 aa11.36□□□□□ -0.59
SQSTM1-205ENST00000464493 OR4F4Q96R69 305 aa11.36□□□□□ -0.59
SQSTM1-205ENST00000464493 PRRT1Q99946 306 aa11.36□□□□□ -0.59
SQSTM1-205ENST00000464493 SRRQ9GZT4 340 aa11.36□□□□□ -0.59
SQSTM1-205ENST00000464493 FOXA2Q9Y261 457 aaPredicted RBP11.36□□□□□ -0.59
SQSTM1-205ENST00000464493 A0A1W2PN81 502 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 KBTBD11O94819 623 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 S1PR2O95136 353 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 CHRNA7P36544 502 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 LPAR6P43657 344 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 PIGPP57054 158 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 RND3P61587 244 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 KLF9Q13886 244 aaPredicted RBP11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 POU2AF1Q16633 256 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 CNPY1Q3B7I2 92 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 ZNF585BQ52M93 769 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 OR4A47Q6IF82 309 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 TMEM65Q6PI78 240 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 LCNL1Q6ZST4 164 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 GDPD1Q8N9F7 314 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 OR13C8Q8NGS7 320 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 TMEM167AQ8TBQ9 72 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 MRGPRFQ96AM1 343 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 FAM212BQ9NTI7 297 aaPredicted RBP11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 MCUBQ9NWR8 336 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 SLC2A8Q9NY64 477 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 BET1LQ9NYM9 111 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 COMMD9Q9P000 198 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 SCP2D1Q9UJQ7 156 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 MGAM2Q2M2H8 2515 aa11.35□□□□□ -0.59
SQSTM1-205ENST00000464493 MSGN1A6NI15 193 aa11.34□□□□□ -0.59
SQSTM1-205ENST00000464493 CTSDP07339 412 aaPredicted RBP11.34□□□□□ -0.59
SQSTM1-205ENST00000464493 PF4V1P10720 104 aa11.34□□□□□ -0.59
SQSTM1-205ENST00000464493 FAUP35544 74 aaKnown RBP11.34□□□□□ -0.59
SQSTM1-205ENST00000464493 SURF2Q15527 256 aaPredicted RBP11.34□□□□□ -0.59
SQSTM1-205ENST00000464493 DMBX1Q8NFW5 382 aa11.34□□□□□ -0.59
SQSTM1-205ENST00000464493 OR5M8Q8NGP6 311 aa11.34□□□□□ -0.59
SQSTM1-205ENST00000464493 OR4A5Q8NH83 315 aa11.34□□□□□ -0.59
SQSTM1-205ENST00000464493 SRSF12Q8WXF0 261 aaKnown RBP11.34□□□□□ -0.59
SQSTM1-205ENST00000464493 TMEM68Q96MH6 324 aa11.34□□□□□ -0.59
SQSTM1-205ENST00000464493 PHB2Q99623 299 aa11.34□□□□□ -0.59
SQSTM1-205ENST00000464493 KLK15Q9H2R5 256 aa11.34□□□□□ -0.59
SQSTM1-205ENST00000464493 HRASLSQ9HDD0 168 aa11.34□□□□□ -0.59
SQSTM1-205ENST00000464493 BATF3Q9NR55 127 aa11.34□□□□□ -0.59
SQSTM1-205ENST00000464493 COPZ2Q9P299 210 aa11.34□□□□□ -0.59
SQSTM1-205ENST00000464493 SOX15O60248 233 aa11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 KRASP01116 189 aa11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 IL6RP08887 468 aaPredicted RBP11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 CD40LGP29965 261 aa11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 MAS1LP35410 378 aa11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 CDX1P47902 265 aaPredicted RBP11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 RAB9AP51151 201 aa11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 ERVK-16P61578 105 aa11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 ZNF45Q02386 682 aa11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 C18orf65Q6ZTR6 163 aa11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 CCDC71LQ8N9Z2 235 aa11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 OR5T1Q8NG75 326 aa11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 DEDD2Q8WXF8 326 aa11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 RTBDNQ9BSG5 229 aaPredicted RBP11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 TMEM140Q9NV12 185 aa11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 GPR132Q9UNW8 380 aa11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 C14orf166Q9Y224 244 aaKnown RBP11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 NBEAL1Q6ZS30 2694 aa11.33□□□□□ -0.6
SQSTM1-205ENST00000464493 CMYA5Q8N3K9 4069 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 C3orf85A0A1B0GTC6 90 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 MARCH11A6NNE9 402 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 NUDT19A8MXV4 375 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 UPK2O00526 184 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 SERPINE2P07093 398 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 RPA2P15927 270 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 SLC6A1P30531 599 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 RPL8P62917 257 aaKnown RBP11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 KIAA0141Q14154 515 aaPredicted RBP11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 BAK1Q16611 211 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 ASPHD1Q5U4P2 390 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 TRIQKQ629K1 86 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 ZNF57Q68EA5 555 aaPredicted RBP11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 ZNF695Q8IW36 515 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 KLHL30-AS1Q8NEE0 82 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 SCGB3A2Q96PL1 93 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 SPIN2AQ99865 258 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 SPIN2BQ9BPZ2 258 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 C5orf66Q9H5L9 145 aa11.32□□□□□ -0.6
SQSTM1-205ENST00000464493 TRAV3A0A0B4J244 114 aa11.31□□□□□ -0.6
SQSTM1-205ENST00000464493 H0Y980 276 aa11.31□□□□□ -0.6
SQSTM1-205ENST00000464493 APELAP0DMC3 54 aa11.31□□□□□ -0.6
SQSTM1-205ENST00000464493 HLA-GP17693 338 aa11.31□□□□□ -0.6
SQSTM1-205ENST00000464493 G6PCP35575 357 aa11.31□□□□□ -0.6
SQSTM1-205ENST00000464493 RPL27AP46776 148 aaKnown RBP11.31□□□□□ -0.6
SQSTM1-205ENST00000464493 INPP1P49441 399 aa11.31□□□□□ -0.6
SQSTM1-205ENST00000464493 C10orf55Q5SWW7 151 aa11.31□□□□□ -0.6
SQSTM1-205ENST00000464493 LINC00299Q6ZSB3 139 aa11.31□□□□□ -0.6
SQSTM1-205ENST00000464493 C8orf86Q6ZUL3 223 aa11.31□□□□□ -0.6
SQSTM1-205ENST00000464493 CADM3Q8N126 398 aa11.31□□□□□ -0.6
SQSTM1-205ENST00000464493 ZNF491Q8N8L2 437 aa11.31□□□□□ -0.6
SQSTM1-205ENST00000464493 MYOZ3Q8TDC0 251 aa11.31□□□□□ -0.6
SQSTM1-205ENST00000464493 CASTOR1Q8WTX7 329 aa11.31□□□□□ -0.6
SQSTM1-205ENST00000464493 UBE2E2Q96LR5 201 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms