RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 GP6Q9HCN6 339 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 COX11Q9Y6N1 276 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 V9GYV3 84 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 DCHS1Q96JQ0 3298 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 CDIPTO14735 213 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 CA2P00918 260 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 CGAP01215 116 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 Q0VG73 95 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 VHLLQ6RSH7 139 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 TREML4Q6UXN2 200 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 PQLC2Q6ZP29 291 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 KIR3DL3Q8N743 410 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 KCNS1Q96KK3 526 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 SERTAD4Q9NUC0 356 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 WDR83OSQ9Y284 106 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 PINLYPA6NC86 204 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 AHRRA9YTQ3 701 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 FAM90A26D6RGX4 464 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 PSPNO60542 156 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 MRPL33O75394 65 aaKnown RBP9.75□□□□□ -0.85
CPSF3-202ENST00000460593 CRYBB3P26998 211 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 AESQ08117 197 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 VAMP3Q15836 100 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 ALKBH6Q3KRA9 238 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 FBLN7Q53RD9 439 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 ZNF497Q6ZNH5 498 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 RPS19BP1Q86WX3 136 aaKnown RBP9.75□□□□□ -0.85
CPSF3-202ENST00000460593 ORAOV1Q8WV07 137 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 EAF1Q96JC9 268 aaPredicted RBP9.75□□□□□ -0.85
CPSF3-202ENST00000460593 SSBP3Q9BWW4 388 aaPredicted RBP9.75□□□□□ -0.85
CPSF3-202ENST00000460593 PHF7Q9BWX1 381 aaPredicted RBP9.75□□□□□ -0.85
CPSF3-202ENST00000460593 GAL3ST2Q9H3Q3 398 aa9.75□□□□□ -0.85
CPSF3-202ENST00000460593 YLPM1P49750 1951 aaKnown RBP9.75□□□□□ -0.85
CPSF3-202ENST00000460593 TRAV3A0A0B4J244 114 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 ANKRD30BLA7E2S9 258 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 BMPR1BO00238 502 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 WNT9BO14905 357 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 ZNF324O75467 553 aaPredicted RBP9.74□□□□□ -0.85
CPSF3-202ENST00000460593 GRPP07492 148 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 P0C879 139 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 EN2P19622 333 aaPredicted RBP9.74□□□□□ -0.85
CPSF3-202ENST00000460593 SPATA12Q7Z6I5 190 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 TUSC5Q8IXB3 177 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 MRGPRDQ8TDS7 321 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 TSKUQ8WUA8 353 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 DCTN5Q9BTE1 182 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 TRBV6-6A0A0A6YYG2 114 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 IGHV5-10-1A0A0J9YXX1 117 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 ZNF718Q3SXZ3 478 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 CENPWQ5EE01 88 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 TMEM136Q6ZRR5 245 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 ZNF784Q8NCA9 323 aaPredicted RBP9.74□□□□□ -0.85
CPSF3-202ENST00000460593 ZNF738Q8NE65 137 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 OR4P4Q8NGL7 312 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 SFXN3Q9BWM7 321 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 ADAMTS20P59510 1910 aa9.74□□□□□ -0.85
CPSF3-202ENST00000460593 IGHV1-45A0A0A0MS14 117 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 C12orf77C9JDV5 145 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 NXPH2O95156 264 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 STAG3L2P0CL84 134 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 STAG3L3P0CL85 134 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 MGST1P10620 155 aaKnown RBP9.73□□□□□ -0.85
CPSF3-202ENST00000460593 GCHFRP30047 84 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 SSTR5P35346 364 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 GPR6P46095 362 aaPredicted RBP9.73□□□□□ -0.85
CPSF3-202ENST00000460593 DUSP3P51452 185 aaPredicted RBP9.73□□□□□ -0.85
CPSF3-202ENST00000460593 GNG3P63215 75 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 PMCHL1Q16048 86 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 ZNF826PQ6ZT77 177 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 ZNF645Q8N7E2 425 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 NEUROG1Q92886 237 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 A0A1W2PN81 502 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 SH2D7A6NKC9 451 aaPredicted RBP9.73□□□□□ -0.85
CPSF3-202ENST00000460593 MT-CO3P00414 261 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 CELA3AP09093 270 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 COX6A1P12074 109 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 RAC2P15153 192 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 CDKN1BP46527 198 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 C3AR1Q16581 482 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 VWC2Q2TAL6 325 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 VPS25Q9BRG1 176 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 GGTLC1Q9BX51 225 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 SVILO95425 2214 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 GDF1P27539 372 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 PRRX1P54821 245 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 SLAQ13239 276 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 LDLRAD2Q5SZI1 272 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 MRPL14Q6P1L8 145 aaKnown RBP9.73□□□□□ -0.85
CPSF3-202ENST00000460593 FAM168AQ92567 244 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 MCRIP2Q9BUT9 160 aaKnown RBP9.73□□□□□ -0.85
CPSF3-202ENST00000460593 GCM1Q9NP62 436 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 HEYLQ9NQ87 328 aaPredicted RBP9.73□□□□□ -0.85
CPSF3-202ENST00000460593 PSG11Q9UQ72 335 aa9.73□□□□□ -0.85
CPSF3-202ENST00000460593 HCFC1P51610 2035 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 MYOD1P15172 320 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 IGLL1P15814 213 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 GATA2P23769 480 aaPredicted RBP9.72□□□□□ -0.85
CPSF3-202ENST00000460593 CD24P25063 80 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 TNXAQ16473 311 aa9.72□□□□□ -0.85
CPSF3-202ENST00000460593 CLEC5AQ9NY25 188 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms