RNA–Protein interactions for RNA: ENST00000435201.5

LIMK1-203, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 1,883 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-203ENST00000435201 ACOT6Q3I5F7 207 aaPredicted RBP13.73□□□□□ -0.21
LIMK1-203ENST00000435201 FAM90A2PQ658T7 463 aa13.73□□□□□ -0.21
LIMK1-203ENST00000435201 ZCCHC24Q8N2G6 241 aaKnown RBP13.73□□□□□ -0.21
LIMK1-203ENST00000435201 RNASE6Q93091 150 aaKnown RBP13.73□□□□□ -0.21
LIMK1-203ENST00000435201 SLC25A22Q9H936 323 aa13.73□□□□□ -0.21
LIMK1-203ENST00000435201 TMEM14BQ9NUH8 114 aa13.73□□□□□ -0.21
LIMK1-203ENST00000435201 TMEM106BQ9NUM4 274 aa13.73□□□□□ -0.21
LIMK1-203ENST00000435201 B4DEV8 164 aa13.72□□□□□ -0.21
LIMK1-203ENST00000435201 SHISA9B4DS77 424 aa13.72□□□□□ -0.21
LIMK1-203ENST00000435201 CYB5BO43169 146 aa13.72□□□□□ -0.21
LIMK1-203ENST00000435201 NDUFS6O75380 124 aaKnown RBP13.72□□□□□ -0.21
LIMK1-203ENST00000435201 MMP23AO75900 390 aa13.72□□□□□ -0.21
LIMK1-203ENST00000435201 RAB5AP20339 215 aa13.72□□□□□ -0.21
LIMK1-203ENST00000435201 CASP6P55212 293 aa13.72□□□□□ -0.21
LIMK1-203ENST00000435201 RPL31P62899 125 aaKnown RBP13.72□□□□□ -0.21
LIMK1-203ENST00000435201 HNF4GQ14541 408 aa13.72□□□□□ -0.21
LIMK1-203ENST00000435201 RTL8BQ17RB0 113 aa13.72□□□□□ -0.21
LIMK1-203ENST00000435201 ZCCHC14Q8WYQ9 949 aaKnown RBP13.72□□□□□ -0.21
LIMK1-203ENST00000435201 ZNF714Q96N38 554 aa13.72□□□□□ -0.21
LIMK1-203ENST00000435201 DYNLRB1Q9NP97 96 aa13.72□□□□□ -0.21
LIMK1-203ENST00000435201 SIRT7Q9NRC8 400 aa13.72□□□□□ -0.21
LIMK1-203ENST00000435201 MAP1BP46821 2468 aaKnown RBP13.72□□□□□ -0.21
LIMK1-203ENST00000435201 NDUFA2O43678 99 aa13.72□□□□□ -0.21
LIMK1-203ENST00000435201 HSPE1P61604 102 aaKnown RBP13.72□□□□□ -0.21
LIMK1-203ENST00000435201 HABP2Q14520 560 aaPredicted RBP13.72□□□□□ -0.21
LIMK1-203ENST00000435201 HEPN1Q6WQI6 88 aa13.72□□□□□ -0.21
LIMK1-203ENST00000435201 MALSU1Q96EH3 234 aa13.72□□□□□ -0.21
LIMK1-203ENST00000435201 MS4A5Q9H3V2 200 aa13.72□□□□□ -0.21
LIMK1-203ENST00000435201 MANBALQ9NQG1 85 aa13.72□□□□□ -0.21
LIMK1-203ENST00000435201 CXorf65A6NEN9 183 aa13.71□□□□□ -0.21
LIMK1-203ENST00000435201 PRSS46E5RG02 174 aa13.71□□□□□ -0.21
LIMK1-203ENST00000435201 E7EQL1 145 aa13.71□□□□□ -0.21
LIMK1-203ENST00000435201 PSMB3P49720 205 aa13.71□□□□□ -0.21
LIMK1-203ENST00000435201 ZNF833PQ6ZTB9 187 aa13.71□□□□□ -0.21
LIMK1-203ENST00000435201 DMRTC2Q8IXT2 367 aaPredicted RBP13.71□□□□□ -0.21
LIMK1-203ENST00000435201 FAM24BQ8N5W8 94 aa13.71□□□□□ -0.21
LIMK1-203ENST00000435201 CCL17Q92583 94 aa13.71□□□□□ -0.21
LIMK1-203ENST00000435201 ENY2Q9NPA8 101 aa13.71□□□□□ -0.21
LIMK1-203ENST00000435201 PRNDQ9UKY0 176 aa13.71□□□□□ -0.21
LIMK1-203ENST00000435201 KLF2Q9Y5W3 355 aaPredicted RBP13.71□□□□□ -0.21
LIMK1-203ENST00000435201 TET2Q6N021 2002 aaPredicted RBP13.71□□□□□ -0.22
LIMK1-203ENST00000435201 RRHO14718 337 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 NDUFB3O43676 98 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 CT45A6P0DMU7 189 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 CT45A5P0DMU8 189 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 CT45A7P0DMV0 189 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 MEF2BQ02080 365 aaPredicted RBP13.7□□□□□ -0.22
LIMK1-203ENST00000435201 EFNB3Q15768 340 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 LRRC10Q5BKY1 277 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 Q8N7P7 452 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 YPEL4Q96NS1 127 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 SLC35D1Q9NTN3 355 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 PRELID1Q9Y255 219 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 SMCO3A2RU48 225 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 TNFRSF13BO14836 293 aaPredicted RBP13.7□□□□□ -0.22
LIMK1-203ENST00000435201 ATXN7O15265 892 aaPredicted RBP13.7□□□□□ -0.22
LIMK1-203ENST00000435201 CD3EP07766 207 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 AGAP20933 346 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 CDC34P49427 236 aaPredicted RBP13.7□□□□□ -0.22
LIMK1-203ENST00000435201 ZFP82Q8N141 532 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 SLC24A4Q8NFF2 622 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 OR13D1Q8NGV5 346 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 C2CD4CQ8TF44 421 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 RAB24Q969Q5 203 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 KCNIP2Q9NS61 270 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 ZNF257Q9Y2Q1 563 aa13.7□□□□□ -0.22
LIMK1-203ENST00000435201 ATMQ13315 3056 aa13.69□□□□□ -0.22
LIMK1-203ENST00000435201 SPTBN2O15020 2390 aa13.69□□□□□ -0.22
LIMK1-203ENST00000435201 SEC14L6B5MCN3 397 aa13.69□□□□□ -0.22
LIMK1-203ENST00000435201 IFNA4P05014 189 aa13.69□□□□□ -0.22
LIMK1-203ENST00000435201 IL6RP08887 468 aaPredicted RBP13.69□□□□□ -0.22
LIMK1-203ENST00000435201 APOBEC3AP31941 199 aaPredicted RBP13.69□□□□□ -0.22
LIMK1-203ENST00000435201 OPRK1P41145 380 aa13.69□□□□□ -0.22
LIMK1-203ENST00000435201 TMEM200BQ69YZ2 307 aa13.69□□□□□ -0.22
LIMK1-203ENST00000435201 TREML4Q6UXN2 200 aa13.69□□□□□ -0.22
LIMK1-203ENST00000435201 ABHD12Q8N2K0 398 aa13.69□□□□□ -0.22
LIMK1-203ENST00000435201 OR51B2Q9Y5P1 312 aa13.69□□□□□ -0.22
LIMK1-203ENST00000435201 PIEZO2Q9H5I5 2752 aa13.68□□□□□ -0.22
LIMK1-203ENST00000435201 YLPM1P49750 1951 aaKnown RBP13.68□□□□□ -0.22
LIMK1-203ENST00000435201 hCG_1809904A0A1W2PP81 198 aa13.68□□□□□ -0.22
LIMK1-203ENST00000435201 A0A1W2PR64 198 aa13.68□□□□□ -0.22
LIMK1-203ENST00000435201 A0A1W2PRV1 198 aa13.68□□□□□ -0.22
LIMK1-203ENST00000435201 B9A039 149 aa13.68□□□□□ -0.22
LIMK1-203ENST00000435201 TMEM250H0YL14 139 aa13.68□□□□□ -0.22
LIMK1-203ENST00000435201 NPY1RP25929 384 aa13.68□□□□□ -0.22
LIMK1-203ENST00000435201 C8orf31Q8N9H6 132 aa13.68□□□□□ -0.22
LIMK1-203ENST00000435201 TMEM170AQ8WVE7 144 aa13.68□□□□□ -0.22
LIMK1-203ENST00000435201 RAB1CQ92928 201 aa13.68□□□□□ -0.22
LIMK1-203ENST00000435201 KAAG1Q9UBP8 84 aa13.68□□□□□ -0.22
LIMK1-203ENST00000435201 CEP295Q9C0D2 2601 aa13.68□□□□□ -0.22
LIMK1-203ENST00000435201 UPK2O00526 184 aa13.67□□□□□ -0.22
LIMK1-203ENST00000435201 HMGB3O15347 200 aaKnown RBP13.67□□□□□ -0.22
LIMK1-203ENST00000435201 EIF3GO75821 320 aaKnown RBP eCLIP13.67□□□□□ -0.22
LIMK1-203ENST00000435201 APOA2P02652 100 aa13.67□□□□□ -0.22
LIMK1-203ENST00000435201 CCL3L1P16619 93 aa13.67□□□□□ -0.22
LIMK1-203ENST00000435201 CA7P43166 264 aa13.67□□□□□ -0.22
LIMK1-203ENST00000435201 CD81P60033 236 aa13.67□□□□□ -0.22
LIMK1-203ENST00000435201 TMEM249Q2WGJ8 235 aa13.67□□□□□ -0.22
LIMK1-203ENST00000435201 FAM71F2Q6NXP2 309 aa13.67□□□□□ -0.22
LIMK1-203ENST00000435201 OSR1Q8TAX0 266 aaPredicted RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms