RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 PRSS46E5RG02 174 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 CDIPTO14735 213 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 PPBPP02775 128 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 EN2P19622 333 aaPredicted RBP8.9□□□□□ -0.98
USP54-204ENST00000422491 SRIP30626 198 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 ZXDAP98168 799 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 AARDQ4LEZ3 155 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 MED12LQ86YW9 2145 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 ATOH7Q8N100 152 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 FAM19A2Q8N3H0 131 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 OR4F17Q8NGA8 305 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 OR5B3Q8NH48 314 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 IGHV1-69-2A0A0G2JMI3 117 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 IGLC7A0M8Q6 106 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 GDF9O60383 454 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 SPINK4O60575 86 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 RFPL3SP0C7P2 107 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 RAC2P15153 192 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 FOXG1P55316 489 aaPredicted RBP8.9□□□□□ -0.98
USP54-204ENST00000422491 ERVK11-1P61568 191 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 MRGPRDQ8TDS7 321 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 HES4Q9HCC6 221 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 KCNIP1Q9NZI2 227 aa8.9□□□□□ -0.98
USP54-204ENST00000422491 NXPH2O95156 264 aa8.9□□□□□ -0.99
USP54-204ENST00000422491 COL8A2P25067 703 aa8.9□□□□□ -0.99
USP54-204ENST00000422491 TMPRSS3P57727 454 aa8.9□□□□□ -0.99
USP54-204ENST00000422491 COX19Q49B96 90 aa8.9□□□□□ -0.99
USP54-204ENST00000422491 PDLIM3Q53GG5 364 aaPredicted RBP8.9□□□□□ -0.99
USP54-204ENST00000422491 WDR86Q86TI4 376 aa8.9□□□□□ -0.99
USP54-204ENST00000422491 VASH2Q86V25 355 aa8.9□□□□□ -0.99
USP54-204ENST00000422491 PNKDQ8N490 385 aa8.9□□□□□ -0.99
USP54-204ENST00000422491 C1orf159Q96HA4 380 aa8.9□□□□□ -0.99
USP54-204ENST00000422491 CLEC7AQ9BXN2 247 aa8.9□□□□□ -0.99
USP54-204ENST00000422491 MS4A5Q9H3V2 200 aa8.9□□□□□ -0.99
USP54-204ENST00000422491 WDR54Q9H977 334 aa8.9□□□□□ -0.99
USP54-204ENST00000422491 SEPSECSQ9HD40 501 aaKnown RBP8.9□□□□□ -0.99
USP54-204ENST00000422491 CDC42EP3Q9UKI2 254 aa8.9□□□□□ -0.99
USP54-204ENST00000422491 IGHV5-10-1A0A0J9YXX1 117 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 A0A1W2PQM1 296 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 MRPL33O75394 65 aaKnown RBP8.89□□□□□ -0.99
USP54-204ENST00000422491 TNFSF4P23510 183 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 LINC00205P59089 165 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 RHOBP62745 196 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 PMCHL1Q16048 86 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 WIPI1Q5MNZ9 446 aaPredicted RBP8.89□□□□□ -0.99
USP54-204ENST00000422491 SPATA31B1PQ5VZV4 182 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 STUMQ69YW2 141 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 ETFRF1Q6IPR1 90 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 LCN12Q6JVE5 192 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 ALKBH2Q6NS38 261 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 RPS19BP1Q86WX3 136 aaKnown RBP8.89□□□□□ -0.99
USP54-204ENST00000422491 OR52L2PQ8NGH6 319 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 LINC00470Q9BZP3 86 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 WDR87Q6ZQQ6 2873 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 LINC00473A8K010 186 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 C12orf77C9JDV5 145 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 OR9G9P0C7N8 305 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 AREGP15514 252 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 SLC35B1P78383 322 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 RPL19P84098 196 aaKnown RBP8.89□□□□□ -0.99
USP54-204ENST00000422491 CENPWQ5EE01 88 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 MUC15Q8N387 334 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 OR4C5Q8NGB2 326 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 OR4P4Q8NGL7 312 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 GALMQ96C23 342 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 TAAR6Q96RI8 345 aa8.89□□□□□ -0.99
USP54-204ENST00000422491 LSM4Q9Y4Z0 139 aaKnown RBP8.89□□□□□ -0.99
USP54-204ENST00000422491 FOXH1O75593 365 aa8.88□□□□□ -0.99
USP54-204ENST00000422491 HLA-DQA1P01909 254 aa8.88□□□□□ -0.99
USP54-204ENST00000422491 AMY1AP04745 511 aa8.88□□□□□ -0.99
USP54-204ENST00000422491 ZNF146Q15072 292 aa8.88□□□□□ -0.99
USP54-204ENST00000422491 EFNB3Q15768 340 aa8.88□□□□□ -0.99
USP54-204ENST00000422491 WDR31Q8NA23 367 aa8.88□□□□□ -0.99
USP54-204ENST00000422491 ZNF439Q8NDP4 499 aa8.88□□□□□ -0.99
USP54-204ENST00000422491 BORCS7Q96B45 105 aa8.88□□□□□ -0.99
USP54-204ENST00000422491 RNASE7Q9H1E1 156 aaKnown RBP8.88□□□□□ -0.99
USP54-204ENST00000422491 SDK1Q7Z5N4 2213 aa8.88□□□□□ -0.99
USP54-204ENST00000422491 KMT2EQ8IZD2 1858 aa8.88□□□□□ -0.99
USP54-204ENST00000422491 IGKV3D-15A0A087WSY6 115 aa8.88□□□□□ -0.99
USP54-204ENST00000422491 TRAV30A0A087WSZ9 112 aa8.88□□□□□ -0.99
USP54-204ENST00000422491 RNF151Q2KHN1 245 aa8.88□□□□□ -0.99
USP54-204ENST00000422491 DOLPP1Q86YN1 238 aa8.88□□□□□ -0.99
USP54-204ENST00000422491 LOXL4Q96JB6 756 aa8.88□□□□□ -0.99
USP54-204ENST00000422491 OSTCQ9NRP0 149 aa8.88□□□□□ -0.99
USP54-204ENST00000422491 MRPL27Q9P0M9 148 aaKnown RBP8.88□□□□□ -0.99
USP54-204ENST00000422491 TRAV9-2A0A087WT02 112 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 H0YJW9 148 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 NTF3P20783 257 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 GNG4P50150 75 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 SELENOVP59797 346 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 ARG2P78540 354 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 FXYD3Q14802 87 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 GUSBP11Q6P575 273 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 TIPARPQ7Z3E1 657 aaKnown RBP8.87□□□□□ -0.99
USP54-204ENST00000422491 Q8IYB0 196 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 SCCPDHQ8NBX0 429 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 C18orf32Q8TCD1 76 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 SSMEM1Q8WWF3 244 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 BRWD1Q9NSI6 2320 aa8.87□□□□□ -0.99
USP54-204ENST00000422491 C2CD4DB7Z1M9 353 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms