RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 FXYD6Q9H0Q3 95 aa21.98■■□□□ 1.11
HMGB1-205ENST00000399494 SRRM4A7MD48 611 aaKnown RBP21.97■■□□□ 1.11
HMGB1-205ENST00000399494 M0QYG6 137 aa21.97■■□□□ 1.11
HMGB1-205ENST00000399494 IFNA6P05013 189 aa21.97■■□□□ 1.11
HMGB1-205ENST00000399494 UBE2KP61086 200 aa21.97■■□□□ 1.11
HMGB1-205ENST00000399494 TMEM267Q0VDI3 215 aaPredicted RBP21.97■■□□□ 1.11
HMGB1-205ENST00000399494 AADACL3Q5VUY0 350 aa21.97■■□□□ 1.11
HMGB1-205ENST00000399494 ARPC1AQ92747 370 aa21.97■■□□□ 1.11
HMGB1-205ENST00000399494 FAM103A1Q9BTL3 118 aaKnown RBP21.97■■□□□ 1.11
HMGB1-205ENST00000399494 NXF2Q9GZY0 626 aaKnown RBP21.97■■□□□ 1.11
HMGB1-205ENST00000399494 FBXO7Q9Y3I1 522 aa21.97■■□□□ 1.11
HMGB1-205ENST00000399494 SOX15O60248 233 aa21.96■■□□□ 1.11
HMGB1-205ENST00000399494 CRYGBP07316 175 aa21.96■■□□□ 1.11
HMGB1-205ENST00000399494 GNRHRP30968 328 aa21.96■■□□□ 1.11
HMGB1-205ENST00000399494 CRIP2P52943 208 aaPredicted RBP21.96■■□□□ 1.11
HMGB1-205ENST00000399494 SLURP1P55000 103 aa21.96■■□□□ 1.11
HMGB1-205ENST00000399494 FXYD3Q14802 87 aa21.96■■□□□ 1.11
HMGB1-205ENST00000399494 TEX45Q8NA69 505 aa21.96■■□□□ 1.11
HMGB1-205ENST00000399494 GRPEL2Q8TAA5 225 aa21.96■■□□□ 1.11
HMGB1-205ENST00000399494 RYR2Q92736 4967 aa21.95■■□□□ 1.1
HMGB1-205ENST00000399494 LINC01619G3V211 115 aa21.95■■□□□ 1.1
HMGB1-205ENST00000399494 FRMD6-AS1P0C7T7 363 aa21.95■■□□□ 1.1
HMGB1-205ENST00000399494 TBPP20226 339 aa21.95■■□□□ 1.1
HMGB1-205ENST00000399494 TNFSF8P32971 234 aa21.95■■□□□ 1.1
HMGB1-205ENST00000399494 TAS2R19P59542 299 aa21.95■■□□□ 1.1
HMGB1-205ENST00000399494 CMTM1Q8IZ96 169 aa21.95■■□□□ 1.1
HMGB1-205ENST00000399494 POC5Q8NA72 575 aa21.95■■□□□ 1.1
HMGB1-205ENST00000399494 OR51H1Q8NH63 302 aa21.95■■□□□ 1.1
HMGB1-205ENST00000399494 A0A1W2PN81 502 aa21.94■■□□□ 1.1
HMGB1-205ENST00000399494 CREBL2O60519 120 aaPredicted RBP21.94■■□□□ 1.1
HMGB1-205ENST00000399494 CD3DP04234 171 aa21.94■■□□□ 1.1
HMGB1-205ENST00000399494 SAA1P0DJI8 122 aaPredicted RBP21.94■■□□□ 1.1
HMGB1-205ENST00000399494 GP9P14770 177 aa21.94■■□□□ 1.1
HMGB1-205ENST00000399494 CHRNA7P36544 502 aa21.94■■□□□ 1.1
HMGB1-205ENST00000399494 SSBP1Q04837 148 aaKnown RBP21.94■■□□□ 1.1
HMGB1-205ENST00000399494 PJVKQ0ZLH3 352 aa21.94■■□□□ 1.1
HMGB1-205ENST00000399494 LPCAT3Q6P1A2 487 aa21.94■■□□□ 1.1
HMGB1-205ENST00000399494 ACSM6Q6P461 480 aa21.94■■□□□ 1.1
HMGB1-205ENST00000399494 UNQ5815/PRO19632Q6UWF5 114 aa21.94■■□□□ 1.1
HMGB1-205ENST00000399494 IDO2Q6ZQW0 420 aa21.94■■□□□ 1.1
HMGB1-205ENST00000399494 SPAG16Q8N0X2 631 aa21.94■■□□□ 1.1
HMGB1-205ENST00000399494 TCTEX1D1Q8N7M0 179 aa21.94■■□□□ 1.1
HMGB1-205ENST00000399494 SMIM4Q8WVI0 70 aa21.94■■□□□ 1.1
HMGB1-205ENST00000399494 TINAGL1Q9GZM7 467 aaPredicted RBP21.94■■□□□ 1.1
HMGB1-205ENST00000399494 NUBP2Q9Y5Y2 271 aa21.94■■□□□ 1.1
HMGB1-205ENST00000399494 FABP12A6NFH5 140 aa21.93■■□□□ 1.1
HMGB1-205ENST00000399494 GPR31O00270 319 aa21.93■■□□□ 1.1
HMGB1-205ENST00000399494 CTDSPLO15194 276 aa21.93■■□□□ 1.1
HMGB1-205ENST00000399494 RLN1P04808 185 aa21.93■■□□□ 1.1
HMGB1-205ENST00000399494 EGR2P11161 476 aaPredicted RBP21.93■■□□□ 1.1
HMGB1-205ENST00000399494 S100GP29377 79 aa21.93■■□□□ 1.1
HMGB1-205ENST00000399494 S100A5P33763 92 aa21.93■■□□□ 1.1
HMGB1-205ENST00000399494 TMEM229BQ8NBD8 167 aa21.93■■□□□ 1.1
HMGB1-205ENST00000399494 CASTOR1Q8WTX7 329 aa21.93■■□□□ 1.1
HMGB1-205ENST00000399494 FOXA2Q9Y261 457 aaPredicted RBP21.93■■□□□ 1.1
HMGB1-205ENST00000399494 IGHV4OR15-8A0A075B7B6 117 aa21.92■■□□□ 1.1
HMGB1-205ENST00000399494 A0A087WW49 117 aa21.92■■□□□ 1.1
HMGB1-205ENST00000399494 ARPC1BO15143 372 aaKnown RBP21.92■■□□□ 1.1
HMGB1-205ENST00000399494 HRASP01112 189 aa21.92■■□□□ 1.1
HMGB1-205ENST00000399494 LGALS1P09382 135 aaKnown RBP21.92■■□□□ 1.1
HMGB1-205ENST00000399494 TNXAQ16473 311 aa21.92■■□□□ 1.1
HMGB1-205ENST00000399494 VKORC1L1Q8N0U8 176 aa21.92■■□□□ 1.1
HMGB1-205ENST00000399494 LFNGQ8NES3 379 aa21.92■■□□□ 1.1
HMGB1-205ENST00000399494 VSTM2AQ8TAG5 236 aa21.92■■□□□ 1.1
HMGB1-205ENST00000399494 ACTL6BO94805 426 aa21.91■■□□□ 1.1
HMGB1-205ENST00000399494 RAB3DO95716 219 aa21.91■■□□□ 1.1
HMGB1-205ENST00000399494 LYL1P12980 280 aa21.91■■□□□ 1.1
HMGB1-205ENST00000399494 BRWD1-AS2P59051 145 aa21.91■■□□□ 1.1
HMGB1-205ENST00000399494 PRSS8Q16651 343 aa21.91■■□□□ 1.1
HMGB1-205ENST00000399494 AKIRIN2Q53H80 203 aa21.91■■□□□ 1.1
HMGB1-205ENST00000399494 ARRDC1Q8N5I2 433 aa21.91■■□□□ 1.1
HMGB1-205ENST00000399494 AIFM2Q9BRQ8 373 aa21.91■■□□□ 1.1
HMGB1-205ENST00000399494 RBFOX2O43251 390 aaKnown RBP eCLIP21.9■■□□□ 1.1
HMGB1-205ENST00000399494 STEAP1BQ6NZ63 245 aa21.9■■□□□ 1.1
HMGB1-205ENST00000399494 OR6Q1Q8NGQ2 317 aa21.9■■□□□ 1.1
HMGB1-205ENST00000399494 CD300LFQ8TDQ1 290 aa21.9■■□□□ 1.1
HMGB1-205ENST00000399494 PHB2Q99623 299 aa21.9■■□□□ 1.1
HMGB1-205ENST00000399494 ZMAT4Q9H898 229 aa21.9■■□□□ 1.1
HMGB1-205ENST00000399494 NDUFA13Q9P0J0 144 aa21.9■■□□□ 1.1
HMGB1-205ENST00000399494 PGLYRP1O75594 196 aaPredicted RBP21.89■■□□□ 1.09
HMGB1-205ENST00000399494 CD40LGP29965 261 aa21.89■■□□□ 1.09
HMGB1-205ENST00000399494 PHLDA2Q53GA4 152 aa21.89■■□□□ 1.09
HMGB1-205ENST00000399494 SSX9Q7RTT3 188 aa21.89■■□□□ 1.09
HMGB1-205ENST00000399494 MMD2Q8IY49 270 aa21.89■■□□□ 1.09
HMGB1-205ENST00000399494 SLC38A6Q8IZM9 456 aa21.89■■□□□ 1.09
HMGB1-205ENST00000399494 RHOVQ96L33 236 aa21.89■■□□□ 1.09
HMGB1-205ENST00000399494 ZNF430Q9H8G1 570 aaPredicted RBP21.89■■□□□ 1.09
HMGB1-205ENST00000399494 OR2A4O95047 310 aa21.88■■□□□ 1.09
HMGB1-205ENST00000399494 HPRT1P00492 218 aa21.88■■□□□ 1.09
HMGB1-205ENST00000399494 CD74P04233 296 aa21.88■■□□□ 1.09
HMGB1-205ENST00000399494 PGAM2P15259 253 aa21.88■■□□□ 1.09
HMGB1-205ENST00000399494 UCP3P55916 312 aa21.88■■□□□ 1.09
HMGB1-205ENST00000399494 SSBP2P81877 361 aaPredicted RBP21.88■■□□□ 1.09
HMGB1-205ENST00000399494 OR2A7Q96R45 310 aa21.88■■□□□ 1.09
HMGB1-205ENST00000399494 RSRP1Q9BUV0 290 aa21.88■■□□□ 1.09
HMGB1-205ENST00000399494 TNCP24821 2201 aa21.88■■□□□ 1.09
HMGB1-205ENST00000399494 SACSQ9NZJ4 4579 aa21.87■■□□□ 1.09
HMGB1-205ENST00000399494 KBTBD11O94819 623 aa21.87■■□□□ 1.09
HMGB1-205ENST00000399494 HSPB1P04792 205 aaKnown RBP21.87■■□□□ 1.09
HMGB1-205ENST00000399494 MEF2DQ14814 521 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 1146 ms