RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 SRXN1Q9BYN0 137 aa13.68□□□□□ -0.22
COL18A1-203ENST00000359759 TRAV8-2A0A0B4J237 113 aa13.68□□□□□ -0.22
COL18A1-203ENST00000359759 KCNK17Q96T54 332 aa13.68□□□□□ -0.22
COL18A1-203ENST00000359759 CLDN16Q9Y5I7 305 aa13.68□□□□□ -0.22
COL18A1-203ENST00000359759 KIAA0100Q14667 2235 aaKnown RBP13.68□□□□□ -0.22
COL18A1-203ENST00000359759 KLF4O43474 513 aa13.68□□□□□ -0.22
COL18A1-203ENST00000359759 SYNGR3O43761 229 aa13.68□□□□□ -0.22
COL18A1-203ENST00000359759 CD1AP06126 327 aa13.68□□□□□ -0.22
COL18A1-203ENST00000359759 PKD1L3Q7Z443 1732 aa13.68□□□□□ -0.22
COL18A1-203ENST00000359759 LOC105371242A0A075B767 164 aa13.68□□□□□ -0.22
COL18A1-203ENST00000359759 C2orf68Q2NKX9 166 aa13.68□□□□□ -0.22
COL18A1-203ENST00000359759 TTC9CQ8N5M4 171 aa13.68□□□□□ -0.22
COL18A1-203ENST00000359759 SMIM8Q96KF7 97 aa13.68□□□□□ -0.22
COL18A1-203ENST00000359759 GSN-AS1Q9NRJ2 163 aa13.68□□□□□ -0.22
COL18A1-203ENST00000359759 LINC00614P0C842 121 aa13.68□□□□□ -0.22
COL18A1-203ENST00000359759 MRPL32Q9BYC8 188 aaKnown RBP13.68□□□□□ -0.22
COL18A1-203ENST00000359759 LIPFP07098 398 aa13.67□□□□□ -0.22
COL18A1-203ENST00000359759 CCDC88CQ9P219 2028 aa13.67□□□□□ -0.22
COL18A1-203ENST00000359759 SMAD7O15105 426 aaKnown RBP13.67□□□□□ -0.22
COL18A1-203ENST00000359759 ZNF146Q15072 292 aa13.67□□□□□ -0.22
COL18A1-203ENST00000359759 DRAM1Q8N682 238 aa13.67□□□□□ -0.22
COL18A1-203ENST00000359759 POC1AQ8NBT0 407 aa13.67□□□□□ -0.22
COL18A1-203ENST00000359759 DICER1Q9UPY3 1922 aaKnown RBP13.67□□□□□ -0.22
COL18A1-203ENST00000359759 SAPCD1Q5SSQ6 148 aa13.67□□□□□ -0.22
COL18A1-203ENST00000359759 GFI1BQ5VTD9 330 aa13.67□□□□□ -0.22
COL18A1-203ENST00000359759 KLF14Q8TD94 323 aaPredicted RBP13.67□□□□□ -0.22
COL18A1-203ENST00000359759 NKX2-8O15522 239 aa13.67□□□□□ -0.22
COL18A1-203ENST00000359759 P2RY6Q15077 328 aa13.67□□□□□ -0.22
COL18A1-203ENST00000359759 ITLN2Q8WWU7 325 aaPredicted RBP13.67□□□□□ -0.22
COL18A1-203ENST00000359759 NPIPB11E5RHQ5 1161 aa13.67□□□□□ -0.22
COL18A1-203ENST00000359759 H3BUT2 72 aa13.67□□□□□ -0.22
COL18A1-203ENST00000359759 PF4P02776 101 aa13.67□□□□□ -0.22
COL18A1-203ENST00000359759 DOCK1Q14185 1865 aa13.66□□□□□ -0.22
COL18A1-203ENST00000359759 IGLV1-36A0A0B4J1U3 117 aa13.66□□□□□ -0.22
COL18A1-203ENST00000359759 IGKV1-8A0A0C4DH67 115 aa13.66□□□□□ -0.22
COL18A1-203ENST00000359759 IL36BQ9NZH7 164 aa13.66□□□□□ -0.22
COL18A1-203ENST00000359759 TRAV21A0A0B4J279 112 aa13.66□□□□□ -0.22
COL18A1-203ENST00000359759 HOXA5P20719 270 aa13.66□□□□□ -0.22
COL18A1-203ENST00000359759 DUX3Q96PT4 197 aa13.66□□□□□ -0.22
COL18A1-203ENST00000359759 TMEM106BQ9NUM4 274 aa13.66□□□□□ -0.22
COL18A1-203ENST00000359759 PRB4P10163 310 aaPredicted RBP13.66□□□□□ -0.22
COL18A1-203ENST00000359759 SFTPCP11686 197 aa13.66□□□□□ -0.22
COL18A1-203ENST00000359759 HTN3P15516 51 aa13.66□□□□□ -0.22
COL18A1-203ENST00000359759 WDYHV1Q96HA8 205 aa13.66□□□□□ -0.22
COL18A1-203ENST00000359759 PIN1P1O15428 100 aa13.66□□□□□ -0.22
COL18A1-203ENST00000359759 MEGF9Q9H1U4 602 aa13.66□□□□□ -0.22
COL18A1-203ENST00000359759 IGFBP2P18065 325 aa13.66□□□□□ -0.22
COL18A1-203ENST00000359759 TEX45Q8NA69 505 aa13.66□□□□□ -0.22
COL18A1-203ENST00000359759 FOXA2Q9Y261 457 aaPredicted RBP13.66□□□□□ -0.22
COL18A1-203ENST00000359759 TRBV5-7A0A0A0MS05 114 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 FAM90A26D6RGX4 464 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 ASIPP42127 132 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 ZNF501Q96CX3 271 aaPredicted RBP13.65□□□□□ -0.22
COL18A1-203ENST00000359759 ATP5G3P48201 142 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 REPIN1Q9BWE0 567 aaKnown RBP13.65□□□□□ -0.22
COL18A1-203ENST00000359759 NPCDR1Q9BY65 106 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 LTBP4Q8N2S1 1624 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 PROB1E7EW31 1015 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 TDGF1P13385 188 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 LEPP41159 167 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 TCF23Q7RTU1 214 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 SLC22A18ASQ8N1D0 253 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 Q96M66 194 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 SDHCQ99643 169 aaPredicted RBP13.65□□□□□ -0.22
COL18A1-203ENST00000359759 G6PC2Q9NQR9 355 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 TBR1Q16650 682 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 FOCADQ5VW36 1801 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 ASPHD2Q6ICH7 369 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 JPT1Q9UK76 154 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 OTOFQ9HC10 1997 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 KIAA1551Q9HCM1 1747 aa13.65□□□□□ -0.22
COL18A1-203ENST00000359759 ATG2BQ96BY7 2078 aa13.64□□□□□ -0.23
COL18A1-203ENST00000359759 TRGV3P03979 118 aa13.64□□□□□ -0.23
COL18A1-203ENST00000359759 MPTX1A8MV57 137 aa13.64□□□□□ -0.23
COL18A1-203ENST00000359759 SPAG17Q6Q759 2223 aa13.64□□□□□ -0.23
COL18A1-203ENST00000359759 ZNF708P17019 499 aa13.64□□□□□ -0.23
COL18A1-203ENST00000359759 EFNB1P98172 346 aa13.64□□□□□ -0.23
COL18A1-203ENST00000359759 ZNRF1Q8ND25 227 aa13.64□□□□□ -0.23
COL18A1-203ENST00000359759 CLEC7AQ9BXN2 247 aa13.64□□□□□ -0.23
COL18A1-203ENST00000359759 TMEM50AO95807 157 aa13.64□□□□□ -0.23
COL18A1-203ENST00000359759 FAM71F2Q6NXP2 309 aa13.64□□□□□ -0.23
COL18A1-203ENST00000359759 CLDND2Q8NHS1 167 aa13.64□□□□□ -0.23
COL18A1-203ENST00000359759 TMPRSS3P57727 454 aa13.64□□□□□ -0.23
COL18A1-203ENST00000359759 ATP1A1-AS1Q5TC04 95 aa13.64□□□□□ -0.23
COL18A1-203ENST00000359759 PRR33A8MZF0 331 aa13.63□□□□□ -0.23
COL18A1-203ENST00000359759 CNTFRP26992 372 aa13.63□□□□□ -0.23
COL18A1-203ENST00000359759 NEUROG1Q92886 237 aa13.63□□□□□ -0.23
COL18A1-203ENST00000359759 ANKRD31Q8N7Z5 1873 aa13.63□□□□□ -0.23
COL18A1-203ENST00000359759 NPIPB4C9JG80 1138 aa13.63□□□□□ -0.23
COL18A1-203ENST00000359759 RAB9AP51151 201 aa13.63□□□□□ -0.23
COL18A1-203ENST00000359759 CKS1BP61024 79 aa13.63□□□□□ -0.23
COL18A1-203ENST00000359759 RBMY1BA6NDE4 496 aaKnown RBP13.63□□□□□ -0.23
COL18A1-203ENST00000359759 RBMY1EA6NEQ0 496 aaKnown RBP13.63□□□□□ -0.23
COL18A1-203ENST00000359759 C19orf67A6NJJ6 358 aa13.63□□□□□ -0.23
COL18A1-203ENST00000359759 RBMY1DP0C7P1 496 aaKnown RBP13.63□□□□□ -0.23
COL18A1-203ENST00000359759 RBMY1A1P0DJD3 496 aaKnown RBP13.63□□□□□ -0.23
COL18A1-203ENST00000359759 RBMY1CP0DJD4 496 aa13.63□□□□□ -0.23
COL18A1-203ENST00000359759 GLMPQ8WWB7 406 aa13.63□□□□□ -0.23
COL18A1-203ENST00000359759 TUBA4BQ9H853 241 aa13.63□□□□□ -0.23
COL18A1-203ENST00000359759 CCL19Q99731 98 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms