RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 TMEM167AQ8TBQ9 72 aa17.46■□□□□ 0.39
SHMT1-203ENST00000354098 AIFM2Q9BRQ8 373 aa17.46■□□□□ 0.39
SHMT1-203ENST00000354098 PARP11Q9NR21 331 aa17.46■□□□□ 0.39
SHMT1-203ENST00000354098 TMEM140Q9NV12 185 aa17.46■□□□□ 0.39
SHMT1-203ENST00000354098 PLXNB1O43157 2135 aa17.46■□□□□ 0.38
SHMT1-203ENST00000354098 TCRBP04435 133 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 IL6RP08887 468 aaPredicted RBP17.45■□□□□ 0.38
SHMT1-203ENST00000354098 EGR2P11161 476 aaPredicted RBP17.45■□□□□ 0.38
SHMT1-203ENST00000354098 TMEM128Q5BJH2 165 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 C10orf99Q6UWK7 81 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 SLC25A42Q86VD7 318 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 FOXRED2Q8IWF2 684 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 LHFPL5Q8TAF8 219 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 VSTM2AQ8TAG5 236 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 GALNT14Q96FL9 552 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 SEC22AQ96IW7 307 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 FAM103A1Q9BTL3 118 aaKnown RBP17.45■□□□□ 0.38
SHMT1-203ENST00000354098 BET1LQ9NYM9 111 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 KCNIP3Q9Y2W7 256 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 FAM240BA0A1B0GVZ2 78 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 AP4M1O00189 453 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 B3GALNT1O75752 331 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 ERVK-16P61578 105 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 DHODHQ02127 395 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 SRSF4Q08170 494 aaKnown RBP17.45■□□□□ 0.38
SHMT1-203ENST00000354098 FXYD3Q14802 87 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 TNXAQ16473 311 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 STPG2Q8N412 459 aa17.45■□□□□ 0.38
SHMT1-203ENST00000354098 CNIH1O95406 144 aa17.44■□□□□ 0.38
SHMT1-203ENST00000354098 CDS2O95674 445 aa17.44■□□□□ 0.38
SHMT1-203ENST00000354098 IGF1P05019 195 aa17.44■□□□□ 0.38
SHMT1-203ENST00000354098 ANXA7P20073 488 aaKnown RBP17.44■□□□□ 0.38
SHMT1-203ENST00000354098 PPP1R1AQ13522 171 aa17.44■□□□□ 0.38
SHMT1-203ENST00000354098 TMEM187Q14656 261 aa17.44■□□□□ 0.38
SHMT1-203ENST00000354098 C12orf54Q6X4T0 127 aa17.44■□□□□ 0.38
SHMT1-203ENST00000354098 WFDC12Q8WWY7 111 aa17.44■□□□□ 0.38
SHMT1-203ENST00000354098 C20orf85Q9H1P6 137 aa17.44■□□□□ 0.38
SHMT1-203ENST00000354098 WSB1Q9Y6I7 421 aa17.44■□□□□ 0.38
SHMT1-203ENST00000354098 G3V318 75 aa17.43■□□□□ 0.38
SHMT1-203ENST00000354098 UPK2O00526 184 aa17.43■□□□□ 0.38
SHMT1-203ENST00000354098 IGKV1-5P01602 117 aa17.43■□□□□ 0.38
SHMT1-203ENST00000354098 MYOD1P15172 320 aa17.43■□□□□ 0.38
SHMT1-203ENST00000354098 VAMP1P23763 118 aa17.43■□□□□ 0.38
SHMT1-203ENST00000354098 HIST2H2BDQ6DRA6 164 aa17.43■□□□□ 0.38
SHMT1-203ENST00000354098 CENPVQ7Z7K6 275 aaPredicted RBP17.43■□□□□ 0.38
SHMT1-203ENST00000354098 ZNF329Q86UD4 541 aa17.43■□□□□ 0.38
SHMT1-203ENST00000354098 MMD2Q8IY49 270 aa17.43■□□□□ 0.38
SHMT1-203ENST00000354098 GRPEL2Q8TAA5 225 aa17.43■□□□□ 0.38
SHMT1-203ENST00000354098 ABHD5Q8WTS1 349 aa17.43■□□□□ 0.38
SHMT1-203ENST00000354098 TRAV6A0A075B6T7 132 aa17.42■□□□□ 0.38
SHMT1-203ENST00000354098 OR9G9P0C7N8 305 aa17.42■□□□□ 0.38
SHMT1-203ENST00000354098 IZUMO4Q1ZYL8 232 aa17.42■□□□□ 0.38
SHMT1-203ENST00000354098 C10orf55Q5SWW7 151 aa17.42■□□□□ 0.38
SHMT1-203ENST00000354098 SELENOHQ8IZQ5 122 aaKnown RBP17.42■□□□□ 0.38
SHMT1-203ENST00000354098 WIPF2Q8TF74 440 aaPredicted RBP17.42■□□□□ 0.38
SHMT1-203ENST00000354098 ARPC1AQ92747 370 aa17.42■□□□□ 0.38
SHMT1-203ENST00000354098 NUDT15Q9NV35 164 aa17.42■□□□□ 0.38
SHMT1-203ENST00000354098 NSG2Q9Y328 171 aa17.42■□□□□ 0.38
SHMT1-203ENST00000354098 NRARPQ7Z6K4 114 aa17.42■□□□□ 0.38
SHMT1-203ENST00000354098 OR4A5Q8NH83 315 aa17.42■□□□□ 0.38
SHMT1-203ENST00000354098 CHPT1Q8WUD6 406 aa17.42■□□□□ 0.38
SHMT1-203ENST00000354098 TMEM56Q96MV1 263 aa17.42■□□□□ 0.38
SHMT1-203ENST00000354098 TMEM56-RWDD3S4R434 201 aa17.42■□□□□ 0.38
SHMT1-203ENST00000354098 E7EUB6 86 aa17.41■□□□□ 0.38
SHMT1-203ENST00000354098 OPN1MWP04001 364 aa17.41■□□□□ 0.38
SHMT1-203ENST00000354098 OPN1MW2P0DN77 364 aa17.41■□□□□ 0.38
SHMT1-203ENST00000354098 OPN1MW3P0DN78 364 aa17.41■□□□□ 0.38
SHMT1-203ENST00000354098 DEFA1P59665 94 aa17.41■□□□□ 0.38
SHMT1-203ENST00000354098 DEFA3P59666 94 aa17.41■□□□□ 0.38
SHMT1-203ENST00000354098 RPL8P62917 257 aaKnown RBP17.41■□□□□ 0.38
SHMT1-203ENST00000354098 TMEM268Q5VZI3 342 aa17.41■□□□□ 0.38
SHMT1-203ENST00000354098 H2BFWTQ7Z2G1 175 aa17.41■□□□□ 0.38
SHMT1-203ENST00000354098 ZNF695Q8IW36 515 aa17.41■□□□□ 0.38
SHMT1-203ENST00000354098 C11orf44Q8N8P7 122 aa17.41■□□□□ 0.38
SHMT1-203ENST00000354098 STAB1Q9NY15 2570 aa17.41■□□□□ 0.38
SHMT1-203ENST00000354098 CREBL2O60519 120 aaPredicted RBP17.4■□□□□ 0.38
SHMT1-203ENST00000354098 ACTL6BO94805 426 aa17.4■□□□□ 0.38
SHMT1-203ENST00000354098 SFT2D2O95562 160 aa17.4■□□□□ 0.38
SHMT1-203ENST00000354098 OR4E1P0C645 316 aa17.4■□□□□ 0.38
SHMT1-203ENST00000354098 ECSCRQ19T08 205 aa17.4■□□□□ 0.38
SHMT1-203ENST00000354098 C3orf56Q8N813 242 aa17.4■□□□□ 0.38
SHMT1-203ENST00000354098 LFNGQ8NES3 379 aa17.4■□□□□ 0.38
SHMT1-203ENST00000354098 OR5AU1Q8NGC0 362 aa17.4■□□□□ 0.38
SHMT1-203ENST00000354098 SGMS2Q8NHU3 365 aa17.4■□□□□ 0.38
SHMT1-203ENST00000354098 ENKURQ8TC29 256 aa17.4■□□□□ 0.38
SHMT1-203ENST00000354098 CASTOR1Q8WTX7 329 aa17.4■□□□□ 0.38
SHMT1-203ENST00000354098 SRSF12Q8WXF0 261 aaKnown RBP17.4■□□□□ 0.38
SHMT1-203ENST00000354098 RBPMSQ93062 196 aaKnown RBP17.4■□□□□ 0.38
SHMT1-203ENST00000354098 NUBP2Q9Y5Y2 271 aa17.4■□□□□ 0.38
SHMT1-203ENST00000354098 TNCP24821 2201 aa17.4■□□□□ 0.38
SHMT1-203ENST00000354098 TRAV41A0A0B4J266 112 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 A0A0G2JRQ6 117 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 PSMB11A5LHX3 300 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 MSGN1A6NI15 193 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 P0C879 139 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 APELAP0DMC3 54 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 ANXA3P12429 323 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 HLA-GP17693 338 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 AKR1C2P52895 323 aa17.39■□□□□ 0.37
SHMT1-203ENST00000354098 UBE2MP61081 183 aaKnown RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms